IGVFFI2412RPSY

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI2412RPSY/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2412RPSY",
10    "aliases": [
11        "leif-ludwig:measurement2305510014_scATAC_L002_seqspec"
12    ],
13    "assay_titles": [
14        "10x multiome with scMito-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "03cda907190bc7b2bb2c06dc83238935",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-19T16:10:36.432051+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS8732GYRE/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS8732GYRE",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002764/",
36            "term_name": "single-cell ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/primary-cells/IGVFSM5838MXOZ/",
42                "@type": [
43                    "PrimaryCell",
44                    "Biosample",
45                    "Sample",
46                    "Item"
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48                "accession": "IGVFSM5838MXOZ",
49                "classifications": [
50                    "primary cell"
51                ],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/CL_2000001/",
55                        "status": "released",
56                        "term_name": "peripheral blood mononuclear cell"
57                    }
58                ],
59                "status": "preview",
60                "summary": "Homo sapiens (female, 22 years) peripheral blood mononuclear cell",
61                "taxa": "Homo sapiens"
62            }
63        ],
64        "status": "preview",
65        "summary": "10x multiome with scMito-seq"
66    },
67    "file_size": 1495,
68    "gene_list_for": [],
69    "href": "/configuration-files/IGVFFI2412RPSY/@@download/IGVFFI2412RPSY.yaml.gz",
70    "input_file_for": [],
71    "integrated_in": [],
72    "lab": {
73        "@id": "/labs/leif-ludwig/",
74        "title": "Leif Ludwig, MDC"
75    },
76    "loci_list_for": [],
77    "md5sum": "1b3a45d5ff1a3bfc0f9a5a3ca5c007f3",
78    "quality_metrics": [],
79    "s3_uri": "s3://igvf-files/2025/03/19/1e8eaa56-4275-4272-bcc5-28ad32102831/IGVFFI2412RPSY.yaml.gz",
80    "schema_version": "7",
81    "seqspec_of": [
82        "/sequence-files/IGVFFI0341KJPB/",
83        "/sequence-files/IGVFFI6537PQVB/",
84        "/sequence-files/IGVFFI2157XOKZ/"
85    ],
86    "status": "preview",
87    "submitted_by": {
88        "@id": "/users/8164e524-79d5-4407-8a75-c0ea353d28ea/",
89        "title": "Ludwig Lab"
90    },
91    "submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2305510014_scATAC_L002.spec.yaml.gz",
92    "summary": "seqspec of IGVFFI0341KJPB, IGVFFI6537PQVB, IGVFFI2157XOKZ",
93    "upload_status": "validated",
94    "uuid": "1e8eaa56-4275-4272-bcc5-28ad32102831",
95    "validate_onlist_files": true
96}