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INDEXED
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ConfigurationFile
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IGVFFI2368QXMP
IGVFFI2368QXMP
released
validated
Json view
File Set
IGVFDS8103FALC
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI6925QBZF, IGVFFI1854TKLE, IGVFFI8604YVJN, IGVFFI6835HOWG
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp12_atac_10x1_NGS7
md5sum
582590f0d6647b50df5c7d118d5bc007
Content MD5sum
8aa5a5c3d5a9edb8c0e9266a3c5c560e
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x1_NGS7_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1854TKLE
fastq
reads
1
Read 2
Illumina NovaSeq X
225JCCLT3
7
4.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI6835HOWG
fastq
reads
1
Illumina NovaSeq X
225JCCLT3
7
907 MB
Ansuman Satpathy, Stanford
validated
IGVFFI6925QBZF
fastq
reads
1
Barcode index
Illumina NovaSeq X
225JCCLT3
7
2.2 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8604YVJN
fastq
reads
1
Read 1
Illumina NovaSeq X
225JCCLT3
7
4.0 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3641EGVH
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford