IGVFFI2275SMIL

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI2275SMIL/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2275SMIL",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_exp13_multi_10x1_NGS3"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "dbecf18ae56ddab268b389ffa6557b47",
23    "content_type": "seqspec",
24    "creation_timestamp": "2024-09-18T02:34:14.360123+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/auxiliary-sets/IGVFDS1833OZIZ/",
28        "@type": [
29            "AuxiliarySet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS1833OZIZ",
34        "file_set_type": "lipid-conjugated oligo sequencing",
35        "samples": [
36            {
37                "@id": "/multiplexed-samples/IGVFSM6422YWWA/",
38                "@type": [
39                    "MultiplexedSample",
40                    "Sample",
41                    "Item"
42                ],
43                "accession": "IGVFSM6422YWWA",
44                "classifications": [
45                    "tissue",
46                    "multiplexed sample"
47                ],
48                "disease_terms": [
49                    {
50                        "@id": "/phenotype-terms/MONDO_0005010/",
51                        "@type": [
52                            "PhenotypeTerm",
53                            "OntologyTerm",
54                            "Item"
55                        ],
56                        "status": "released",
57                        "summary": "coronary artery disorder",
58                        "term_name": "coronary artery disorder"
59                    }
60                ],
61                "modifications": [],
62                "sample_terms": [
63                    {
64                        "@id": "/sample-terms/UBERON_0001626/",
65                        "status": "released",
66                        "term_name": "left coronary artery"
67                    }
68                ],
69                "status": "released",
70                "summary": "multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples",
71                "taxa": "Homo sapiens",
72                "treatments": []
73            }
74        ],
75        "status": "released",
76        "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
77    },
78    "file_size": 1337,
79    "gene_list_for": [],
80    "href": "/configuration-files/IGVFFI2275SMIL/@@download/IGVFFI2275SMIL.yaml.gz",
81    "input_file_for": [],
82    "integrated_in": [],
83    "lab": {
84        "@id": "/labs/ansuman-satpathy/",
85        "title": "Ansuman Satpathy, Stanford"
86    },
87    "loci_list_for": [],
88    "md5sum": "1a95ab8296ed0d56fc755e026ac6bcc7",
89    "quality_metrics": [],
90    "release_timestamp": "2025-03-22T00:40:22.340991+00:00",
91    "s3_uri": "s3://igvf-files/2024/09/18/5806b877-6e4f-49e5-bd12-25e4547c081b/IGVFFI2275SMIL.yaml.gz",
92    "schema_version": "7",
93    "seqspec_of": [
94        "/sequence-files/IGVFFI6566IFXE/",
95        "/sequence-files/IGVFFI1871WQFF/",
96        "/sequence-files/IGVFFI7782QRSO/",
97        "/sequence-files/IGVFFI1199PPTE/"
98    ],
99    "status": "released",
100    "submitted_by": {
101        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
102        "title": "Christopher Mcginnis"
103    },
104    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp13_multi_10x1_NGS3_multi_seqspec.yaml.gz",
105    "summary": "seqspec of IGVFFI6566IFXE, IGVFFI1871WQFF, IGVFFI7782QRSO, IGVFFI1199PPTE",
106    "upload_status": "validated",
107    "uuid": "5806b877-6e4f-49e5-bd12-25e4547c081b",
108    "validate_onlist_files": false
109}