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INDEXED
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ConfigurationFile
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IGVFFI2247FLEB
IGVFFI2247FLEB
released
validated
Json view
File Set
IGVFDS3954OIWN
(single-cell ATAC-seq (SHARE-seq))
Summary
seqspec of IGVFFI8873ROJR, IGVFFI5527SVWF, IGVFFI3855LXKJ
File Format
yaml
Content Type
seqspec
Aliases
buenrostro-bernstein:IGVFFI8873ROJR_seqspec
md5sum
55fcaba607a8c9ec353559916bb2a9e5
Content MD5sum
bcdd1eb0aa7c122a0bd97c398b78a987
File Size
1.2 KB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/seqspecs/IGVFFI8873ROJR_seqspec.yaml.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
seqspec File Of
3 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI3855LXKJ
fastq
reads
1
Barcode index
Illumina NovaSeq 6000
4.2 GB
Jason Buenrostro, Broad
validated
IGVFFI5527SVWF
fastq
reads
1
Read 2
Illumina NovaSeq 6000
8.3 GB
Jason Buenrostro, Broad
validated
IGVFFI8873ROJR
fastq
reads
1
Read 1
Illumina NovaSeq 6000
7.8 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM4239FRER
InVitroSystem
colonic epithelium
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days