Home

IGVFFI2244VIBN

released
validation exempted
File Set
IGVFDS6025YVWB(lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide)
Summary
seqspec of IGVFFI1036VIZR, IGVFFI3649BFMY, IGVFFI7292WBKA, IGVFFI0588OGYF, IGVFFI4158ARBZ, IGVFFI1750URUK, IGVFFI7600YJXG, IGVFFI9004TQNF, IGVFFI8910POLM
File Format
yaml
Content Type
seqspec
md5sum
20f2ee616c19d0fdcac924f51a3381d0
Content MD5sum
8155685961f57e889e7de77fd97917f2
File Size
1.6 KB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/proximalPromotor/count/seqspec/IGVF_shendure_progReg_HEK293T_count_rep3_rna.yaml.gz"
Checkfiles Version
No version due to exemption
Submitter Comment
"This file was previously validated by legacy checkfiles and is seqspec v0.3.0. It is now local checkfiles V17 validated, patched to be validation exempted as a part of portal-wide seqspec updating effort."
Attribution
Nadav Ahituv, UCSF

seqspec File Of

9 items
Read Names
fastq
reads
5
Barcode forward
787 MB
Nadav Ahituv, UCSF
validated
fastq
reads
4
Barcode forward
1.1 GB
Nadav Ahituv, UCSF
validated
fastq
reads
5
Barcode reverse
782 MB
Nadav Ahituv, UCSF
validated
fastq
reads
4
UMI
1.2 GB
Nadav Ahituv, UCSF
validated
fastq
reads
5
UMI
827 MB
Nadav Ahituv, UCSF
validated
fastq
reads
4
Barcode reverse
1.1 GB
Nadav Ahituv, UCSF
validated
fastq
reads
6
Barcode forward
1.2 GB
Nadav Ahituv, UCSF
validated
fastq
reads
6
Barcode reverse
1.2 GB
Nadav Ahituv, UCSF
validated
fastq
reads
6
UMI
1.3 GB
Nadav Ahituv, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) HEK293T pooled cell specimen transduced (lentivirus) with a reporter library

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
barcode to element mapping
Nadav Ahituv, UCSF
728 MB
validated