IGVFFI2200KEXT

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI2200KEXT/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2200KEXT",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_8552_seqspec"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "1bb517c670842e0691e275013aec1b70",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-28T18:23:51.712756+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS1628VOEK/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS1628VOEK",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002764/",
36            "term_name": "single-cell ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/in-vitro-systems/IGVFSM4166RBAA/",
42                "@type": [
43                    "InVitroSystem",
44                    "Biosample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM4166RBAA",
49                "classifications": [
50                    "pooled cell specimen",
51                    "differentiated cell specimen"
52                ],
53                "sample_terms": [
54                    {
55                        "@id": "/sample-terms/EFO_0004905/",
56                        "status": "released",
57                        "term_name": "induced pluripotent stem cell"
58                    }
59                ],
60                "status": "released",
61                "summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 177)",
62                "targeted_sample_term": {
63                    "@id": "/sample-terms/CL_0002196/",
64                    "status": "released",
65                    "term_name": "hepatic oval stem cell"
66                },
67                "taxa": "Homo sapiens"
68            }
69        ],
70        "status": "released",
71        "summary": "single-cell ATAC-seq (SHARE-seq)"
72    },
73    "file_size": 1332,
74    "gene_list_for": [],
75    "href": "/configuration-files/IGVFFI2200KEXT/@@download/IGVFFI2200KEXT.yaml.gz",
76    "input_file_for": [],
77    "integrated_in": [],
78    "lab": {
79        "@id": "/labs/jason-buenrostro/",
80        "title": "Jason Buenrostro, Broad"
81    },
82    "loci_list_for": [],
83    "md5sum": "21408dbc66a7223cd702f0d21e0700b1",
84    "quality_metrics": [],
85    "release_timestamp": "2025-04-10T20:59:19.522105+00:00",
86    "s3_uri": "s3://igvf-files/2025/03/28/a0e603df-8a4b-43c8-be44-60e35cc3b6b1/IGVFFI2200KEXT.yaml.gz",
87    "schema_version": "7",
88    "seqspec_of": [
89        "/sequence-files/IGVFFI9717SFSV/",
90        "/sequence-files/IGVFFI1219JJYD/",
91        "/sequence-files/IGVFFI7284RSHV/"
92    ],
93    "status": "released",
94    "submitted_by": {
95        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
96        "title": "Siddarth Wekhande"
97    },
98    "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI9717SFSV_seqspec.yaml.gz",
99    "summary": "seqspec of IGVFFI9717SFSV, IGVFFI1219JJYD, IGVFFI7284RSHV",
100    "upload_status": "validated",
101    "uuid": "a0e603df-8a4b-43c8-be44-60e35cc3b6b1",
102    "validate_onlist_files": true
103}