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INDEXED
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ConfigurationFile
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IGVFFI2154CUWA
IGVFFI2154CUWA
released
validated
Json view
File Set
IGVFDS7744TQIF
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI8408YXMK, IGVFFI0241PHEX, IGVFFI1280ZQJU, IGVFFI6337LBXU
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp18_atac_10x2_NGS1
md5sum
76c5b006cf28a0a88d22c1fb8c58c2d3
Content MD5sum
43ef0dadb050d44af143e97c32ea4d8b
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp18_atac_10x2_NGS1_atac_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG011972
—
Jesse Engreitz
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0241PHEX
fastq
reads
1
Barcode index
Illumina NovaSeq X
22FL7YLT4
1
15 GB
Ansuman Satpathy, Stanford
validated
IGVFFI1280ZQJU
fastq
reads
1
Read 2
Illumina NovaSeq X
22FL7YLT4
1
25 GB
Ansuman Satpathy, Stanford
validated
IGVFFI6337LBXU
fastq
reads
1
Illumina NovaSeq X
22FL7YLT4
1
6.4 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8408YXMK
fastq
reads
1
Read 1
Illumina NovaSeq X
22FL7YLT4
1
25 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9642EHZY
MultiplexedSample
HCT116
,
HUDEP-2
,
IMR-90
,
MCF-7
,
SK-N-SH
,
TeloHAEC
multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples