IGVFFI2135IRVA

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI2135IRVA/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2135IRVA",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "checkfiles_version": "v17",
19    "content_md5sum": "e5699f1dc592519e94e54832d814a515",
20    "content_type": "seqspec",
21    "creation_timestamp": "2024-09-18T17:47:38.898766+00:00",
22    "file_format": "yaml",
23    "file_set": {
24        "@id": "/measurement-sets/IGVFDS5380BIVB/",
25        "@type": [
26            "MeasurementSet",
27            "FileSet",
28            "Item"
29        ],
30        "accession": "IGVFDS5380BIVB",
31        "assay_term": {
32            "@id": "/assay-terms/OBI_0003109/",
33            "term_name": "single-nucleus RNA sequencing assay"
34        },
35        "file_set_type": "experimental data",
36        "samples": [
37            {
38                "@id": "/multiplexed-samples/IGVFSM3934NLNI/",
39                "@type": [
40                    "MultiplexedSample",
41                    "Sample",
42                    "Item"
43                ],
44                "accession": "IGVFSM3934NLNI",
45                "classifications": [
46                    "tissue",
47                    "multiplexed sample"
48                ],
49                "disease_terms": [],
50                "modifications": [],
51                "sample_terms": [
52                    {
53                        "@id": "/sample-terms/UBERON_0001388/",
54                        "status": "released",
55                        "term_name": "gastrocnemius"
56                    },
57                    {
58                        "@id": "/sample-terms/UBERON_0002113/",
59                        "status": "released",
60                        "term_name": "kidney"
61                    }
62                ],
63                "status": "released",
64                "summary": "multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus WSB/EiJ (male, 69 days) kidney tissue; ... and 126 more samples",
65                "taxa": "Mus musculus",
66                "treatments": []
67            }
68        ],
69        "status": "released",
70        "summary": "Parse SPLiT-seq"
71    },
72    "file_size": 1352,
73    "gene_list_for": [],
74    "href": "/configuration-files/IGVFFI2135IRVA/@@download/IGVFFI2135IRVA.yaml.gz",
75    "input_file_for": [],
76    "integrated_in": [],
77    "lab": {
78        "@id": "/labs/ali-mortazavi/",
79        "title": "Ali Mortazavi, UCI"
80    },
81    "loci_list_for": [],
82    "md5sum": "07cf19fef4150e3ac66c7deb15de2340",
83    "quality_metrics": [],
84    "release_timestamp": "2025-04-19T01:24:26.178679+00:00",
85    "s3_uri": "s3://igvf-files/2024/09/18/38a4cbd5-4bf0-4a1e-ab23-081ae9a031b6/IGVFFI2135IRVA.yaml.gz",
86    "schema_version": "7",
87    "seqspec_of": [
88        "/sequence-files/IGVFFI0234FTOL/",
89        "/sequence-files/IGVFFI1677ZWLA/"
90    ],
91    "status": "released",
92    "submitted_by": {
93        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
94        "title": "Diane Trout"
95    },
96    "summary": "seqspec of IGVFFI0234FTOL, IGVFFI1677ZWLA",
97    "upload_status": "validated",
98    "uuid": "38a4cbd5-4bf0-4a1e-ab23-081ae9a031b6",
99    "validate_onlist_files": true
100}