IGVFFI2048SUWP

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI2048SUWP/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI2048SUWP",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_exp5_atac_10x4_NGS2"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "checkfiles_version": "v16",
    "content_md5sum": "808b242af0e41c9b4a7e1cf2cbdbb8e6",
    "content_type": "seqspec",
    "creation_timestamp": "2024-09-18T02:39:20.578795+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS1201SHMG/",
        "accession": "IGVFDS1201SHMG",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM3106AWHF/",
                "accession": "IGVFSM3106AWHF",
                "classifications": [
                    "cell line",
                    "differentiated cell specimen",
                    "gastruloid",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0001184/",
                        "status": "released",
                        "term_name": "HEK293T"
                    },
                    {
                        "@id": "/sample-terms/EFO_0003042/",
                        "status": "released",
                        "term_name": "H1-hESC"
                    },
                    {
                        "@id": "/sample-terms/EFO_0003045/",
                        "status": "released",
                        "term_name": "H9"
                    },
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
    },
    "file_size": 1374,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI2048SUWP/@@download/IGVFFI2048SUWP.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "5ad2b9548005511a3d8367cbe67556b0",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:12:09.774155+00:00",
    "s3_uri": "s3://igvf-files/2024/09/18/2decd707-0fe8-4d0a-8e6c-4c493fe238f0/IGVFFI2048SUWP.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI1901KKVA/",
        "/sequence-files/IGVFFI3229MBWW/",
        "/sequence-files/IGVFFI5594EEAT/",
        "/sequence-files/IGVFFI1990SBCJ/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp5_atac_10x4_NGS2_atac_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI1901KKVA, IGVFFI3229MBWW, IGVFFI5594EEAT, IGVFFI1990SBCJ",
    "upload_status": "validated",
    "uuid": "2decd707-0fe8-4d0a-8e6c-4c493fe238f0",
    "validate_onlist_files": true
}