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IGVFFI2016UNPC

released
validated
File Set
IGVFDS8929VNCP(gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci)
Summary
seqspec of IGVFFI0355AKWQ, IGVFFI0332PBFZ, IGVFFI7148JTBN
File Format
yaml
Content Type
seqspec
Aliases
jay-shendure:CRISPRa_singlecell_K562_VP64_10Xlane2_seqlane2_CS1_seqspec
md5sum
1cb121470f5db753b5b6674219200a06
Content MD5sum
2700ac6a34e8d700adb7fa500b9ef045
File Size
1.4 KB
Submitted File Name
/net/shendure/vol1/home/martin91/IGVF/forupload/seqspecs/CRISPRa/CRISPRa_IGVFDS8929VNCP_2_CS1_seqspec_v3.yaml.gz
Checkfiles Version
v20
Attribution
Jay Shendure, UW

seqspec File Of

3 items
Read Names
fastq
reads
1
Read 1
AAAHG2HHV
2
855 MB
Jay Shendure, UW
validated
fastq
reads
1
AAAHG2HHV
2
276 MB
Jay Shendure, UW
validated
fastq
reads
1
Read 2
AAAHG2HHV
2
1.3 GB
Jay Shendure, UW
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line (cellular sub pool: 10Xlane2) modified with CRISPRa Sp-dCas9-VP64, transfected with a guide library