IGVFFI2002EFOE

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI2002EFOE/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI2002EFOE",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_exp6_atac_10x1_NGS3"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "checkfiles_version": "v16",
    "content_md5sum": "25a54002540b0c45543f3cecfa5ef893",
    "content_type": "seqspec",
    "creation_timestamp": "2024-09-18T02:41:38.874266+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS6426PXJS/",
        "accession": "IGVFDS6426PXJS",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM9282FATG/",
                "accession": "IGVFSM9282FATG",
                "classifications": [
                    "cell line",
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0003042/",
                        "status": "released",
                        "term_name": "H1-hESC"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
    },
    "file_size": 1371,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI2002EFOE/@@download/IGVFFI2002EFOE.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "03aa087e17e339461801bbf7f7ab4d7c",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:12:38.609009+00:00",
    "s3_uri": "s3://igvf-files/2024/09/18/8ce1e51b-4a2e-4251-81e0-96c08749e50d/IGVFFI2002EFOE.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI8979PRPV/",
        "/sequence-files/IGVFFI7301KOCO/",
        "/sequence-files/IGVFFI0290IALO/",
        "/sequence-files/IGVFFI6013HIIW/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp6_atac_10x1_NGS3_atac_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI8979PRPV, IGVFFI7301KOCO, IGVFFI0290IALO, IGVFFI6013HIIW",
    "upload_status": "validated",
    "uuid": "8ce1e51b-4a2e-4251-81e0-96c08749e50d",
    "validate_onlist_files": true
}