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INDEXED
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/
ConfigurationFile
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IGVFFI1907QFYO
IGVFFI1907QFYO
released
validated
Json view
File Set
IGVFDS5059CAEA
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI8499ZNOH, IGVFFI5676OFMI, IGVFFI6491ZFGC, IGVFFI2906ZCJH
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp13_atac_10x4_NGS1
md5sum
abf35e861cbcbe509abaf6820489263e
Content MD5sum
3af999f184dea233fd7b3f41cf8c6f5d
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp13_atac_10x4_NGS1_atac_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2906ZCJH
fastq
reads
1
Read 2
Illumina NovaSeq X
22JL3GLT3
1
9.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5676OFMI
fastq
reads
1
Illumina NovaSeq X
22JL3GLT3
1
2.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI6491ZFGC
fastq
reads
1
Barcode index
Illumina NovaSeq X
22JL3GLT3
1
5.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8499ZNOH
fastq
reads
1
Read 1
Illumina NovaSeq X
22JL3GLT3
1
9.3 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4220ALCU
MultiplexedSample
left coronary artery
coronary artery disorder
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples