IGVFFI1789UQVU

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI1789UQVU/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI1789UQVU",
10    "aliases": [
11        "leif-ludwig:measurement2306520006_scATAC_L001_seqspec"
12    ],
13    "assay_titles": [
14        "10x multiome with scMito-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "0c7f505b802d07aa1dc6998c43161304",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-18T17:16:16.878410+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS2406JVCK/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS2406JVCK",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002764/",
36            "term_name": "single-cell ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/primary-cells/IGVFSM1705OPIJ/",
42                "@type": [
43                    "PrimaryCell",
44                    "Biosample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM1705OPIJ",
49                "classifications": [
50                    "primary cell"
51                ],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/CL_2000001/",
55                        "status": "released",
56                        "term_name": "peripheral blood mononuclear cell"
57                    }
58                ],
59                "status": "preview",
60                "summary": "Homo sapiens (female, 70 years) peripheral blood mononuclear cell",
61                "taxa": "Homo sapiens"
62            }
63        ],
64        "status": "preview",
65        "summary": "10x multiome with scMito-seq"
66    },
67    "file_size": 1504,
68    "gene_list_for": [],
69    "href": "/configuration-files/IGVFFI1789UQVU/@@download/IGVFFI1789UQVU.yaml.gz",
70    "input_file_for": [],
71    "integrated_in": [],
72    "lab": {
73        "@id": "/labs/leif-ludwig/",
74        "title": "Leif Ludwig, MDC"
75    },
76    "loci_list_for": [],
77    "md5sum": "fdcb1cb2087ccba7adc8e158956c13d2",
78    "quality_metrics": [],
79    "s3_uri": "s3://igvf-files/2025/03/18/05e7dc15-4fe9-41a0-bbf8-420dfa9c8f32/IGVFFI1789UQVU.yaml.gz",
80    "schema_version": "7",
81    "seqspec_of": [
82        "/sequence-files/IGVFFI1457APHZ/",
83        "/sequence-files/IGVFFI3022DLZK/",
84        "/sequence-files/IGVFFI8110QNOX/"
85    ],
86    "status": "preview",
87    "submitted_by": {
88        "@id": "/users/8164e524-79d5-4407-8a75-c0ea353d28ea/",
89        "title": "Ludwig Lab"
90    },
91    "submitted_file_name": "/data/cephfs-1/work/projects/ludwig-igvf/IGVF/NEW_seqspecs/new_seqspecs_part1/seqspecs_samples_16-28/measurement2306520006_scATAC_L001.spec.yaml.gz",
92    "summary": "seqspec of IGVFFI1457APHZ, IGVFFI3022DLZK, IGVFFI8110QNOX",
93    "upload_status": "validated",
94    "uuid": "05e7dc15-4fe9-41a0-bbf8-420dfa9c8f32",
95    "validate_onlist_files": true
96}