{
"@context": "/terms/",
"@id": "/configuration-files/IGVFFI1570HKMV/",
"@type": [
"ConfigurationFile",
"File",
"Item"
],
"accession": "IGVFFI1570HKMV",
"aliases": [
"jesse-engreitz:seqspecfile_crispr_CRUDO_TAPseq_Auxin6hrs-Rep2-S3"
],
"assay_titles": [
"TAP-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"content_md5sum": "73fdb676ac31dc8a8c6aba88758a67c3",
"content_type": "seqspec",
"creation_timestamp": "2024-06-20T17:16:49.580901+00:00",
"file_format": "yaml",
"file_set": {
"@id": "/auxiliary-sets/IGVFDS4057PFBU/",
"accession": "IGVFDS4057PFBU",
"file_set_type": "gRNA sequencing",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM8511JOMW/",
"accession": "IGVFSM8511JOMW",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"term_name": "HCT116"
}
],
"summary": "HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"summary": "gRNA sequencing for mixed TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci"
},
"file_size": 1173,
"gene_list_for": [],
"href": "/configuration-files/IGVFFI1570HKMV/@@download/IGVFFI1570HKMV.yaml.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"loci_list_for": [],
"md5sum": "ee1280f19f06f01baca72dc425fc8534",
"release_timestamp": "2024-07-10T20:26:55.691791+00:00",
"s3_uri": "s3://igvf-files/2024/06/20/2b5c9ef7-bbae-430a-a525-7f31fd797ba6/IGVFFI1570HKMV.yaml.gz",
"schema_version": "7",
"seqspec_of": [
"/sequence-files/IGVFFI3142LWDR/",
"/sequence-files/IGVFFI6662ZMLA/",
"/sequence-files/IGVFFI6509IKAK/"
],
"status": "released",
"submitted_by": {
"@id": "/users/100f06c6-83a7-4b4d-9dfd-053a1829773b/",
"title": "Benjamin Doughty"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin6hrs-Rep2-S3.crispr.yaml.gz",
"summary": "seqspec of IGVFFI3142LWDR, IGVFFI6662ZMLA, IGVFFI6509IKAK",
"upload_status": "validated",
"uuid": "2b5c9ef7-bbae-430a-a525-7f31fd797ba6"
}