IGVFFI1513HTOS

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI1513HTOS/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI1513HTOS",
10    "aliases": [
11        "buenrostro-bernstein:IGVFFI2327DFZG_seqspec"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "7b450632bf32f467d2f4cbda37898a37",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-18T17:54:03.387494+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS1680VACI/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS1680VACI",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002764/",
36            "term_name": "single-cell ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/primary-cells/IGVFSM7017UXAA/",
42                "@type": [
43                    "PrimaryCell",
44                    "Biosample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM7017UXAA",
49                "classifications": [
50                    "primary cell"
51                ],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/UBERON_0001155/",
55                        "status": "released",
56                        "term_name": "colon"
57                    }
58                ],
59                "status": "released",
60                "summary": "Mus musculus C57BL/6J colon cell",
61                "taxa": "Mus musculus"
62            }
63        ],
64        "status": "released",
65        "summary": "single-cell ATAC-seq (SHARE-seq)"
66    },
67    "file_size": 1220,
68    "gene_list_for": [],
69    "href": "/configuration-files/IGVFFI1513HTOS/@@download/IGVFFI1513HTOS.yaml.gz",
70    "input_file_for": [],
71    "integrated_in": [],
72    "lab": {
73        "@id": "/labs/jason-buenrostro/",
74        "title": "Jason Buenrostro, Broad"
75    },
76    "loci_list_for": [],
77    "md5sum": "4d2bbaee6e37a558d9ed399cb9fcbe04",
78    "quality_metrics": [],
79    "release_timestamp": "2025-03-26T17:34:47.101656+00:00",
80    "s3_uri": "s3://igvf-files/2025/03/18/ed282649-c44d-463d-921d-c267d0dc852e/IGVFFI1513HTOS.yaml.gz",
81    "schema_version": "7",
82    "seqspec_of": [
83        "/sequence-files/IGVFFI7719OGVL/",
84        "/sequence-files/IGVFFI2327DFZG/",
85        "/sequence-files/IGVFFI6721AYTQ/"
86    ],
87    "status": "released",
88    "submitted_by": {
89        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
90        "title": "Siddarth Wekhande"
91    },
92    "submitted_file_name": "gs://sw-igvf-submission/surya-mouse-colitis/seqspecs/IGVFFI2327DFZG_seqspec.yaml.gz",
93    "summary": "seqspec of IGVFFI7719OGVL, IGVFFI2327DFZG, IGVFFI6721AYTQ",
94    "upload_status": "validated",
95    "uuid": "ed282649-c44d-463d-921d-c267d0dc852e",
96    "validate_onlist_files": true
97}