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INDEXED
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IGVFFI1510CBWW
IGVFFI1510CBWW
released
validated
Json view
File Set
IGVFDS7359TFTN
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI2221QTKE, IGVFFI5994KKRZ, IGVFFI8127WKJW, IGVFFI8152JUHC
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp12_atac_10x2_NGS3
md5sum
e50250be27af6d1569367651c563fa9c
Content MD5sum
0c248cf45fe86f8de72aa4a9e3453fc6
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x2_NGS3_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2221QTKE
fastq
reads
1
Barcode index
Illumina NovaSeq X
225JTGLT3
3
2.8 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5994KKRZ
fastq
reads
1
Read 1
Illumina NovaSeq X
225JTGLT3
3
5.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8127WKJW
fastq
reads
1
Illumina NovaSeq X
225JTGLT3
3
1.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8152JUHC
fastq
reads
1
Read 2
Illumina NovaSeq X
225JTGLT3
3
5.1 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5189FTFS
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford