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IGVFFI1365BOUI

released
validated
File Set
IGVFDS1013HCXI(interference single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI2803TIGZ, IGVFFI0391NHGA, IGVFFI4665EVGC, IGVFFI4986VMDU
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp10_atac_10x2_NGS2
md5sum
fb0e517ca4123ace0acbf56205cd219c
Content MD5sum
2ab7dbe37397b42f62ca78dd6f564d30
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp10_atac_10x2_NGS2_atac_seqspec.yaml.gz
Checkfiles Version
v16

seqspec File Of

4 items
Read Names
fastq
reads
1
Barcode index
223JKJLT3
8
10 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
1
223JKJLT3
8
4.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
1
Read 1
223JKJLT3
8
19 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
1
Read 2
223JKJLT3
8
19 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford