Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
ConfigurationFile
/
IGVFFI1350XPEC
IGVFFI1350XPEC
released
validated
Json view
File Set
IGVFDS5059CAEA
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI2812SJLR, IGVFFI4236TWSP, IGVFFI5266CCXH, IGVFFI2808YWOH
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp13_atac_10x4_NGS2
md5sum
f14a500701543cbc07f9b672a9beec20
Content MD5sum
2e29d6f6d1ffb5854848bc9623c5e06f
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp13_atac_10x4_NGS2_atac_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2808YWOH
fastq
reads
1
Illumina NovaSeq X
22JL3GLT3
2
2.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2812SJLR
fastq
reads
1
Barcode index
Illumina NovaSeq X
22JL3GLT3
2
5.2 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4236TWSP
fastq
reads
1
Read 2
Illumina NovaSeq X
22JL3GLT3
2
9.2 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5266CCXH
fastq
reads
1
Read 1
Illumina NovaSeq X
22JL3GLT3
2
9.4 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4220ALCU
MultiplexedSample
left coronary artery
coronary artery disorder
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples