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INDEXED
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ConfigurationFile
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IGVFFI1318XWRR
IGVFFI1318XWRR
released
validated
Json view
File Set
IGVFDS8186IYBF
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI4255CKDF, IGVFFI6039ELUA, IGVFFI7823LUGB, IGVFFI8961ACRJ
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp5_atac_10x2_NGS4
md5sum
9837e62922558513a9fa2f33cd0b2506
Content MD5sum
95098300ec1105317826ba117ff95602
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp5_atac_10x2_NGS4_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI4255CKDF
fastq
reads
1
Barcode index
Illumina NovaSeq X
222YV7LT3
8
4.8 GB
Ansuman Satpathy, Stanford
validated
IGVFFI6039ELUA
fastq
reads
1
Illumina NovaSeq X
222YV7LT3
8
2.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7823LUGB
fastq
reads
1
Read 2
Illumina NovaSeq X
222YV7LT3
8
8.9 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8961ACRJ
fastq
reads
1
Read 1
Illumina NovaSeq X
222YV7LT3
8
8.9 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3202SKCS
MultiplexedSample
GM25256 (WTC-11)
,
H1-hESC
,
H9
,
HEK293T
multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford