{
"@context": "/terms/",
"@id": "/configuration-files/IGVFFI1316LXUN/",
"@type": [
"ConfigurationFile",
"File",
"Item"
],
"accession": "IGVFFI1316LXUN",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp3_multi_10x4_NGS2"
],
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"checkfiles_version": "v16",
"content_md5sum": "a07e3ecab815456f73dca2c5989a21d5",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:36:56.324717+00:00",
"file_format": "yaml",
"file_set": {
"@id": "/auxiliary-sets/IGVFDS0470ONXA/",
"accession": "IGVFDS0470ONXA",
"file_set_type": "lipid-conjugated oligo sequencing",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM8265VEJP/",
"accession": "IGVFSM8265VEJP",
"classifications": [
"cell line",
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"status": "released",
"term_name": "HepG2"
},
{
"@id": "/sample-terms/EFO_0003045/",
"status": "released",
"term_name": "H9"
},
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
"file_size": 1333,
"gene_list_for": [],
"href": "/configuration-files/IGVFFI1316LXUN/@@download/IGVFFI1316LXUN.yaml.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
"md5sum": "2ca663f92b072f3a107ba34ceb911d27",
"quality_metrics": [],
"release_timestamp": "2025-03-07T01:11:05.358553+00:00",
"s3_uri": "s3://igvf-files/2024/09/18/b88bd034-c6c9-4632-8cbb-7df612748c4b/IGVFFI1316LXUN.yaml.gz",
"schema_version": "7",
"seqspec_of": [
"/sequence-files/IGVFFI3509TMBC/",
"/sequence-files/IGVFFI8755LWTA/",
"/sequence-files/IGVFFI8863GYDV/",
"/sequence-files/IGVFFI6006WRKM/"
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp3_multi_10x4_NGS2_multi_seqspec.yaml.gz",
"summary": "seqspec of IGVFFI3509TMBC, IGVFFI8755LWTA, IGVFFI8863GYDV, IGVFFI6006WRKM",
"upload_status": "validated",
"uuid": "b88bd034-c6c9-4632-8cbb-7df612748c4b",
"validate_onlist_files": false
}