IGVFFI1305YIYC

released
validation exempted
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI1305YIYC/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI1305YIYC",
10    "assay_titles": [
11        "lentiMPRA"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG011966/",
16        "component": "functional characterization"
17    },
18    "content_md5sum": "9d27c26e5d0697540b4d1dc04038e8c3",
19    "content_type": "seqspec",
20    "creation_timestamp": "2024-12-19T12:25:16.213770+00:00",
21    "derived_from": [
22        "/tabular-files/IGVFFI6803EINC/"
23    ],
24    "description": "Sequence specification of HEK293T DNA counts",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/auxiliary-sets/IGVFDS1836ZBLJ/",
28        "@type": [
29            "AuxiliarySet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS1836ZBLJ",
34        "file_set_type": "quantification DNA barcode sequencing",
35        "status": "released",
36        "summary": "quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide"
37    },
38    "file_size": 1637,
39    "gene_list_for": [],
40    "href": "/configuration-files/IGVFFI1305YIYC/@@download/IGVFFI1305YIYC.yaml.gz",
41    "input_file_for": [],
42    "integrated_in": [],
43    "lab": {
44        "@id": "/labs/nadav-ahituv/",
45        "title": "Nadav Ahituv, UCSF"
46    },
47    "loci_list_for": [],
48    "md5sum": "4c2f3c40663498736cee5b2c7b4410cd",
49    "quality_metrics": [],
50    "release_timestamp": "2025-01-30T17:46:53.370920+00:00",
51    "s3_uri": "s3://igvf-files/2024/12/19/a3391d69-b1e9-4849-9841-89bb14e5292a/IGVFFI1305YIYC.yaml.gz",
52    "schema_version": "7",
53    "seqspec_of": [
54        "/sequence-files/IGVFFI0249XPLJ/",
55        "/sequence-files/IGVFFI1753NTVQ/",
56        "/sequence-files/IGVFFI9700VHVR/",
57        "/sequence-files/IGVFFI8956WSJF/",
58        "/sequence-files/IGVFFI1645IYON/",
59        "/sequence-files/IGVFFI3870FNDY/",
60        "/sequence-files/IGVFFI8165INFB/",
61        "/sequence-files/IGVFFI0980NDTE/",
62        "/sequence-files/IGVFFI3005SRBJ/"
63    ],
64    "status": "released",
65    "submitted_by": {
66        "@id": "/users/3ad3479d-753b-4293-9c09-c0dcabfd0ddb/",
67        "title": "Max Schubach"
68    },
69    "submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/proximalPromotor/count/seqspec/IGVF_shendure_progReg_HEK293T_count_rep3_dna.yaml.gz\"",
70    "submitter_comment": "\"This file was previously validated by legacy checkfiles and is seqspec v0.3.0. It is now local checkfiles V17 validated, patched to be validation exempted as a part of portal-wide seqspec updating effort.\"",
71    "summary": "seqspec of IGVFFI0249XPLJ, IGVFFI1753NTVQ, IGVFFI9700VHVR, IGVFFI8956WSJF, IGVFFI1645IYON, IGVFFI3870FNDY, IGVFFI8165INFB, IGVFFI0980NDTE, IGVFFI3005SRBJ",
72    "upload_status": "validation exempted",
73    "uuid": "a3391d69-b1e9-4849-9841-89bb14e5292a",
74    "validate_onlist_files": false
75}