{
"@context": "/terms/",
"@id": "/configuration-files/IGVFFI1261KWLG/",
"@type": [
"ConfigurationFile",
"File",
"Item"
],
"accession": "IGVFFI1261KWLG",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp6_multi_10x4_NGS1"
],
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"checkfiles_version": "v16",
"content_md5sum": "1dedd21523429d16df0e32736456a1e3",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:42:49.910199+00:00",
"file_format": "yaml",
"file_set": {
"@id": "/auxiliary-sets/IGVFDS8391OPLO/",
"accession": "IGVFDS8391OPLO",
"file_set_type": "lipid-conjugated oligo sequencing",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM2522EBPE/",
"accession": "IGVFSM2522EBPE",
"classifications": [
"cell line",
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
"file_size": 1340,
"gene_list_for": [],
"href": "/configuration-files/IGVFFI1261KWLG/@@download/IGVFFI1261KWLG.yaml.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
"md5sum": "8d8678733f62477c6782aa4b45eb4e49",
"quality_metrics": [],
"release_timestamp": "2025-03-07T01:12:54.469269+00:00",
"s3_uri": "s3://igvf-files/2024/09/18/402c953d-5ecb-4666-8f93-eb1ad0be5f1c/IGVFFI1261KWLG.yaml.gz",
"schema_version": "7",
"seqspec_of": [
"/sequence-files/IGVFFI9231PEVJ/",
"/sequence-files/IGVFFI1487ZOQT/",
"/sequence-files/IGVFFI4932OQSB/",
"/sequence-files/IGVFFI3245FOSR/"
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp6_multi_10x4_NGS1_multi_seqspec.yaml.gz",
"summary": "seqspec of IGVFFI9231PEVJ, IGVFFI1487ZOQT, IGVFFI4932OQSB, IGVFFI3245FOSR",
"upload_status": "validated",
"uuid": "402c953d-5ecb-4666-8f93-eb1ad0be5f1c",
"validate_onlist_files": false
}