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INDEXED
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ConfigurationFile
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IGVFFI1206PVUK
IGVFFI1206PVUK
released
validated
Json view
File Set
IGVFDS9133EBOD
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI4717TQFC, IGVFFI6365VDJL, IGVFFI5586TFET, IGVFFI0803UZPZ
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp17_atac_10x4_NGS2
md5sum
e7825efbfb5951317a05d7b82bcfd689
Content MD5sum
3fd153f5019a2a541eab7e322f51961d
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp17_atac_10x4_NGS2_atac_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG011972
—
Jesse Engreitz
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0803UZPZ
fastq
reads
1
Illumina NovaSeq X
22NF33LT3
6
1.8 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4717TQFC
fastq
reads
1
Read 1
Illumina NovaSeq X
22NF33LT3
6
7.6 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5586TFET
fastq
reads
1
Read 2
Illumina NovaSeq X
22NF33LT3
6
7.4 GB
Ansuman Satpathy, Stanford
validated
IGVFFI6365VDJL
fastq
reads
1
Barcode index
Illumina NovaSeq X
22NF33LT3
6
4.3 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9149ZACE
MultiplexedSample
RUES2
multiplexed sample: Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 2 days; Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 1 day; ... and 10 more samples