IGVFFI1138NZIB

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI1138NZIB/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI1138NZIB",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "checkfiles_version": "v17",
19    "content_md5sum": "eee3715da92092d46d4a7d80cc47b2e0",
20    "content_type": "seqspec",
21    "creation_timestamp": "2024-09-16T17:16:01.173360+00:00",
22    "file_format": "yaml",
23    "file_set": {
24        "@id": "/measurement-sets/IGVFDS9566NPOH/",
25        "@type": [
26            "MeasurementSet",
27            "FileSet",
28            "Item"
29        ],
30        "accession": "IGVFDS9566NPOH",
31        "assay_term": {
32            "@id": "/assay-terms/OBI_0003109/",
33            "term_name": "single-nucleus RNA sequencing assay"
34        },
35        "data_use_limitation_summaries": [
36            "no certificate"
37        ],
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/multiplexed-samples/IGVFSM9129KRNY/",
42                "@type": [
43                    "MultiplexedSample",
44                    "Sample",
45                    "Item"
46                ],
47                "accession": "IGVFSM9129KRNY",
48                "classifications": [
49                    "tissue",
50                    "multiplexed sample"
51                ],
52                "disease_terms": [],
53                "modifications": [],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/NTR_0000646/",
57                        "status": "released",
58                        "term_name": "left cerebral cortex"
59                    },
60                    {
61                        "@id": "/sample-terms/NTR_0000647/",
62                        "status": "released",
63                        "term_name": "right cerebral cortex"
64                    },
65                    {
66                        "@id": "/sample-terms/NTR_0000750/",
67                        "status": "released",
68                        "term_name": "left hippocampal formation"
69                    },
70                    {
71                        "@id": "/sample-terms/NTR_0000751/",
72                        "status": "released",
73                        "term_name": "right hippocampal formation"
74                    },
75                    {
76                        "@id": "/sample-terms/UBERON_0000948/",
77                        "status": "released",
78                        "term_name": "heart"
79                    }
80                ],
81                "status": "released",
82                "summary": "multiplexed sample: Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; Mus musculus 129S1J (male, 72 days) left hippocampal formation tissue; ... and 190 more samples",
83                "taxa": "Mus musculus",
84                "treatments": []
85            }
86        ],
87        "status": "released",
88        "summary": "Parse SPLiT-seq"
89    },
90    "file_size": 1353,
91    "gene_list_for": [],
92    "href": "/configuration-files/IGVFFI1138NZIB/@@download/IGVFFI1138NZIB.yaml.gz",
93    "input_file_for": [],
94    "integrated_in": [],
95    "lab": {
96        "@id": "/labs/ali-mortazavi/",
97        "title": "Ali Mortazavi, UCI"
98    },
99    "loci_list_for": [],
100    "md5sum": "0a18d92c26350982ff69a52be3726724",
101    "quality_metrics": [],
102    "release_timestamp": "2025-04-18T20:38:35.747311+00:00",
103    "s3_uri": "s3://igvf-files/2024/09/16/530b3360-9f21-4842-b074-3e7b2004a9d2/IGVFFI1138NZIB.yaml.gz",
104    "schema_version": "7",
105    "seqspec_of": [
106        "/sequence-files/IGVFFI5660FMKV/",
107        "/sequence-files/IGVFFI4524EQYN/"
108    ],
109    "status": "released",
110    "submitted_by": {
111        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
112        "title": "Diane Trout"
113    },
114    "summary": "seqspec of IGVFFI5660FMKV, IGVFFI4524EQYN",
115    "upload_status": "validated",
116    "uuid": "530b3360-9f21-4842-b074-3e7b2004a9d2",
117    "validate_onlist_files": true
118}