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IGVFFI1053SNJB

released
validated
File Set
IGVFDS3910GBDQ(interference single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI9550CRCV, IGVFFI8243RHWY, IGVFFI0859TDIG, IGVFFI5047YIPF
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp10_atac_10x1_NGS2
md5sum
1636a2f45b461f67d79329cdaba0468b
Content MD5sum
43378c9974440d73c157bbfcff4d3dde
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp10_atac_10x1_NGS2_atac_seqspec.yaml.gz
Checkfiles Version
v16

seqspec File Of

4 items
Read Names
fastq
reads
1
Read 1
223JKJLT3
8
17 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
1
Read 2
223JKJLT3
8
17 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
1
Barcode index
223JKJLT3
8
9.2 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
1
223JKJLT3
8
3.5 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford