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INDEXED
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IGVFFI0980AAAN
IGVFFI0980AAAN
released
validated
Json view
File Set
IGVFDS0584KNPT
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI3072OFFU, IGVFFI2617AXKT, IGVFFI1651QMWN, IGVFFI5162HKBB
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp12_atac_10x5_NGS3
md5sum
bd0c51786002409c92f544621de4f7c2
Content MD5sum
53c4fa97cf088d15e8b69cafd8cd2163
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x5_NGS3_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1651QMWN
fastq
reads
1
Barcode index
Illumina NovaSeq X
225JTGLT3
3
3.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2617AXKT
fastq
reads
1
Illumina NovaSeq X
225JTGLT3
3
1.3 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3072OFFU
fastq
reads
1
Read 2
Illumina NovaSeq X
225JTGLT3
3
5.6 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5162HKBB
fastq
reads
1
Read 1
Illumina NovaSeq X
225JTGLT3
3
5.6 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM1640UGWP
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford