IGVFFI0954MADD

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI0954MADD/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI0954MADD",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_exp15_multi_10x2_NGS1"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "checkfiles_version": "v16",
    "content_md5sum": "4e275fed98219f9c40fad9d3ceb284b0",
    "content_type": "seqspec",
    "creation_timestamp": "2025-02-26T01:44:22.980854+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/auxiliary-sets/IGVFDS3069YZFY/",
        "accession": "IGVFDS3069YZFY",
        "file_set_type": "lipid-conjugated oligo sequencing",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM0825LHRL/",
                "accession": "IGVFSM0825LHRL",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
    },
    "file_size": 1337,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI0954MADD/@@download/IGVFFI0954MADD.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "5bbe03722b3b9caa816e32f027d9d084",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:14:54.756066+00:00",
    "s3_uri": "s3://igvf-files/2025/02/26/8c5286be-0707-4b8b-a72b-c0812c9387a8/IGVFFI0954MADD.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI6339LORA/",
        "/sequence-files/IGVFFI7931LQSS/",
        "/sequence-files/IGVFFI0384CUYL/",
        "/sequence-files/IGVFFI0978XAEL/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp15_multi_10x2_NGS1_multi_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI6339LORA, IGVFFI7931LQSS, IGVFFI0384CUYL, IGVFFI0978XAEL",
    "upload_status": "validated",
    "uuid": "8c5286be-0707-4b8b-a72b-c0812c9387a8",
    "validate_onlist_files": false
}