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IGVFFI0822USFU
IGVFFI0822USFU
released
validated
Json view
File Set
IGVFDS5763YUNI
(lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI4160WPLA, IGVFFI4943MIXV, IGVFFI1383BLSR, IGVFFI0508KNIS
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp17_multi_10x4_NGS4
md5sum
d3673481fc0cedce8b0e858e8c3a434c
Content MD5sum
10b0c7c412d1fa85fd3a4c7a95650bec
File Size
1.3 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp17_multi_10x4_NGS4_multi_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0508KNIS
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
8
53 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1383BLSR
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
8
73 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4160WPLA
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
8
178 MB
Ansuman Satpathy, Stanford
validated
IGVFFI4943MIXV
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
8
401 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9149ZACE
MultiplexedSample
RUES2
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford