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IGVFFI0779XYBH

released
validated
File Set
IGVFDS8748OHPQ(gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
seqspec of IGVFFI0448FLMO, IGVFFI7983EOQT, IGVFFI5285IRWT
File Format
yaml
Content Type
seqspec
Aliases
jesse-engreitz:seqspecfile_crispr_CRUDO_TAPseq_Auxin0hrs-Rep2-S2
md5sum
c0f4d514f6c114449a9c70a4e731ea56
Content MD5sum
5f3126c32d28f0f75fd53d0c4b55b2c2
File Size
1.2 KB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin0hrs-Rep2-S2.crispr.yaml.gz

seqspec File Of

3 items
fastq
reads
1
2
76 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
2
139 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
2
25 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford