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INDEXED
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IGVFFI0770CSFS
IGVFFI0770CSFS
released
validated
Json view
File Set
IGVFDS5941UNYO
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI6559YOVP, IGVFFI4103OUZF, IGVFFI7980UOIM, IGVFFI4530QVSQ
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp9_atac_10x1_NGS2
md5sum
e6df5b80bb240079d9ff43cba1430c1e
Content MD5sum
744f7bfea0f4e8ed66f367611872ee9f
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp9_atac_10x1_NGS2_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI4103OUZF
fastq
reads
1
Read 2
Illumina NovaSeq X
223JGVLT3
6
11 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4530QVSQ
fastq
reads
1
Read 1
Illumina NovaSeq X
223JGVLT3
6
11 GB
Ansuman Satpathy, Stanford
validated
IGVFFI6559YOVP
fastq
reads
1
Illumina NovaSeq X
223JGVLT3
6
2.4 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7980UOIM
fastq
reads
1
Barcode index
Illumina NovaSeq X
223JGVLT3
6
6.0 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9678IFHW
MultiplexedSample
B cell
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford