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INDEXED
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ConfigurationFile
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IGVFFI0690UJGV
IGVFFI0690UJGV
released
validated
Json view
File Set
IGVFDS3169TEEK
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI3023ETQK, IGVFFI4221MLSD, IGVFFI8458QQVB, IGVFFI7273QKAQ
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp1_atac_10x2_NGS2
md5sum
bd3ab17f2f814b18bccf4bd571801a99
Content MD5sum
818c10682658df35e91712d287cb51e5
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp1_atac_10x2_NGS2_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI3023ETQK
fastq
reads
1
Barcode index
Illumina NovaSeq X
2257H3LT3
8
6.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4221MLSD
fastq
reads
1
Read 2
Illumina NovaSeq X
2257H3LT3
8
11 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7273QKAQ
fastq
reads
1
Read 1
Illumina NovaSeq X
2257H3LT3
8
11 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8458QQVB
fastq
reads
1
Illumina NovaSeq X
2257H3LT3
8
2.4 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM8645VILQ
MultiplexedSample
HAP-1
,
HL-60
,
HUDEP-2
,
K562
,
U2OS
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford