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INDEXED
Home
/
ConfigurationFile
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IGVFFI0646XZMN
IGVFFI0646XZMN
released
validated
Json view
File Set
IGVFDS6369SLCB
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI8043XYMX, IGVFFI2670GFYR, IGVFFI4050ZLEP, IGVFFI0553QQBA
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp2_atac_10x1_NGS1
md5sum
e391184e00d754426880ed3a9920226e
Content MD5sum
09d89ce1625d447beec402c0977fe30c
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp2_atac_10x1_NGS1_atac_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0553QQBA
fastq
reads
1
Illumina NovaSeq X
2257H3LT3
7
3.3 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2670GFYR
fastq
reads
1
Read 1
Illumina NovaSeq X
2257H3LT3
7
16 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4050ZLEP
fastq
reads
1
Barcode index
Illumina NovaSeq X
2257H3LT3
7
8.6 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8043XYMX
fastq
reads
1
Read 2
Illumina NovaSeq X
2257H3LT3
7
16 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3646QLDO
MultiplexedSample
TeloHAEC
multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples