{
"@context": "/terms/",
"@id": "/configuration-files/IGVFFI0614GSST/",
"@type": [
"ConfigurationFile",
"File",
"Item"
],
"accession": "IGVFFI0614GSST",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp4_multi_10x2_NGS2"
],
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"checkfiles_version": "v16",
"content_md5sum": "baa01e61f1c988634742f46365bcbf52",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:37:57.449238+00:00",
"file_format": "yaml",
"file_set": {
"@id": "/auxiliary-sets/IGVFDS6940QNAZ/",
"@type": [
"AuxiliarySet",
"FileSet",
"Item"
],
"accession": "IGVFDS6940QNAZ",
"file_set_type": "lipid-conjugated oligo sequencing",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM7068ZFMY/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM7068ZFMY",
"classifications": [
"cell line",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples",
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/2987f643-86dc-4113-af7e-d4b5d162b5c8/",
"purpose": "differentiation",
"status": "in progress",
"summary": "Treatment of 0.025 ng/mL acetylated low density lipoprotein for 1 day",
"treatment_term_name": "acetylated low density lipoprotein"
},
{
"@id": "/treatments/729630f8-aa05-47f5-9cba-ee7a264da593/",
"purpose": "differentiation",
"status": "in progress",
"summary": "Treatment of 50 ng/mL interleukin 4 for 1 day",
"treatment_term_name": "interleukin 4"
},
{
"@id": "/treatments/ae8065d2-85f3-498e-b4f2-01a38756d48e/",
"purpose": "differentiation",
"status": "in progress",
"summary": "Treatment of 20 ng/mL interferon gamma for 1 day",
"treatment_term_name": "interferon gamma"
},
{
"@id": "/treatments/bec71d5e-97ef-489a-acb7-5336691b6c39/",
"purpose": "differentiation",
"status": "in progress",
"summary": "Treatment of 100 ng/mL macrophage colony-stimulating factor 1 for 7 days",
"treatment_term_name": "macrophage colony-stimulating factor 1"
}
]
}
],
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
"file_size": 1336,
"gene_list_for": [],
"href": "/configuration-files/IGVFFI0614GSST/@@download/IGVFFI0614GSST.yaml.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
"md5sum": "5d8864a110b69b3ea7b45c4d9804c56b",
"quality_metrics": [],
"release_timestamp": "2025-03-07T01:11:30.849268+00:00",
"s3_uri": "s3://igvf-files/2024/09/18/84a53a78-74a9-43c3-b471-dff1edd1cba8/IGVFFI0614GSST.yaml.gz",
"schema_version": "7",
"seqspec_of": [
"/sequence-files/IGVFFI8645WDPG/",
"/sequence-files/IGVFFI7881CALF/",
"/sequence-files/IGVFFI2701FCYJ/",
"/sequence-files/IGVFFI8085XVBU/"
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp4_multi_10x2_NGS2_multi_seqspec.yaml.gz",
"summary": "seqspec of IGVFFI8645WDPG, IGVFFI7881CALF, IGVFFI2701FCYJ, IGVFFI8085XVBU",
"upload_status": "validated",
"uuid": "84a53a78-74a9-43c3-b471-dff1edd1cba8",
"validate_onlist_files": false
}