IGVFFI0177NTVE

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI0177NTVE/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI0177NTVE",
    "aliases": [
        "jay-shendure:seqspec_of_set_IGVFDS7446XPVQ-1"
    ],
    "assay_titles": [
        "scATAC-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011966/",
        "component": "functional characterization"
    },
    "content_md5sum": "abfc5d69623ddb8d6d6d36410731c16b",
    "content_type": "seqspec",
    "creation_timestamp": "2024-05-09T23:23:25.148319+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS7446XPVQ/",
        "accession": "IGVFDS7446XPVQ",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM7126ZMPT/",
                "accession": "IGVFSM7126ZMPT",
                "classifications": [
                    "differentiated cell specimen"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0004038/",
                        "term_name": "mouse embryonic stem cell"
                    }
                ],
                "summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44",
                "targeted_sample_term": {
                    "@id": "/sample-terms/UBERON_0014374/",
                    "term_name": "embryoid body"
                },
                "taxa": "Mus musculus"
            }
        ],
        "summary": "scATAC-seq"
    },
    "file_size": 849,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI0177NTVE/@@download/IGVFFI0177NTVE.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jay-shendure/",
        "title": "Jay Shendure, UW"
    },
    "loci_list_for": [],
    "md5sum": "572cf8f0340b25fcc9e08a6736dbda34",
    "release_timestamp": "2024-07-09T20:16:42.663468+00:00",
    "s3_uri": "s3://igvf-files/2024/05/09/e8e7f4bb-ce54-467a-aebd-e6a1b4bbd6fb/IGVFFI0177NTVE.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI8854LSLE/",
        "/sequence-files/IGVFFI9392NJAO/",
        "/sequence-files/IGVFFI5441SJAB/",
        "/sequence-files/IGVFFI9532BEXG/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
        "title": "Beth Martin"
    },
    "submitted_file_name": "/net/shendure/vol1/home/martin91/IGVF/forupload/seqspecs/10XATAC-IGVFDS7446XPVQ-1.yaml.gz",
    "summary": "seqspec of IGVFFI8854LSLE, IGVFFI9392NJAO, IGVFFI5441SJAB, IGVFFI9532BEXG",
    "upload_status": "validated",
    "uuid": "e8e7f4bb-ce54-467a-aebd-e6a1b4bbd6fb"
}