Home

IGVFFI0108AXVA

released
validated
File Set
IGVFDS4834SKZS(gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci)
Summary
seqspec of IGVFFI1773NVFV, IGVFFI2340WJKO, IGVFFI4295KZWO
File Format
yaml
Content Type
seqspec
Aliases
jay-shendure:CRISPRa_singlecell_K562_VPR_10Xlane2_seqlane2_CS1_seqspec
md5sum
544a29333797fdbf9662e3b988f956f4
Content MD5sum
1f051412b1c9d25c1e89e8ef9dd0976a
File Size
1.4 KB
Submitted File Name
/net/shendure/vol1/home/martin91/IGVF/forupload/seqspecs/CRISPRa/CRISPRa_IGVFDS4834SKZS_2_CS1_seqspec_v3.yaml.gz
Checkfiles Version
v20
Attribution
Jay Shendure, UW

seqspec File Of

3 items
Read Names
fastq
reads
1
AAAHG2HHV
2
303 MB
Jay Shendure, UW
validated
fastq
reads
1
Read 1
AAAHG2HHV
2
824 MB
Jay Shendure, UW
validated
fastq
reads
1
Read 2
AAAHG2HHV
2
1.5 GB
Jay Shendure, UW
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line (cellular sub pool: 10Xlane2) modified with CRISPRa Sp-dCas9-VP64-p65-Rta (VPR), transfected with a guide library