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INDEXED
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ConfigurationFile
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IGVFFI0092WEBF
IGVFFI0092WEBF
released
validated
Json view
File Set
IGVFDS8318UIEY
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI7321NWYE, IGVFFI9796TFIS, IGVFFI0811HUWH, IGVFFI4232JXOD
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp11_atac_10x1_NGS1
md5sum
c3556ebd2024d3f5756b9f01c484d3fd
Content MD5sum
681ea929c3fdabf76aee98c6a925e77b
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp11_atac_10x1_NGS1_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0811HUWH
fastq
reads
1
Read 2
Illumina NovaSeq X
225L7NLT3
1
5.7 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4232JXOD
fastq
reads
1
Read 1
Illumina NovaSeq X
225L7NLT3
1
5.7 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7321NWYE
fastq
reads
1
Barcode index
Illumina NovaSeq X
225L7NLT3
1
3.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9796TFIS
fastq
reads
1
Illumina NovaSeq X
225L7NLT3
1
1.4 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9367PJMT
MultiplexedSample
GM25256 (WTC-11)
,
H7-hESC
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford