Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Resources
Data Model
About
Help
Sign In
INDEXED
Home
/
AuxiliarySet
/
IGVFDS8937ZULR
IGVFDS8937ZULR
released
Json view
File Set Type
lipid-conjugated oligo sequencing
Summary
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Aliases
ansuman-satpathy:multiseq_igvf12_10x5
Sequencing Results (Illumina)
28 items
1
2
3
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0183RLSU
fastq
reads
R1
1
IGVFFI7765NWMK
Illumina NovaSeq X
225LWLLT3
3
338 MB
Ansuman Satpathy, Stanford
validated
IGVFFI0462VFFX
fastq
reads
I1
1
IGVFFI0425QEQI
Illumina NovaSeq X
225LWLLT3
6
122 MB
Ansuman Satpathy, Stanford
validated
IGVFFI0898VOFK
fastq
reads
I1
1
IGVFFI0441FRGI
Illumina NovaSeq X
225LWLLT3
1
125 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1149XQRE
fastq
reads
R1
1
IGVFFI5297IJUO
Illumina NovaSeq X
225LWLLT3
2
329 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1480TLUQ
fastq
reads
R2
1
IGVFFI3389ZEVK
Illumina NovaSeq X
225LWLLT3
5
754 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1497ITGW
fastq
reads
R2
1
IGVFFI5297IJUO
Illumina NovaSeq X
225LWLLT3
2
744 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2026RIMK
fastq
reads
R1
1
IGVFFI3389ZEVK
Illumina NovaSeq X
225LWLLT3
5
336 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2061FVIP
fastq
reads
R2
1
IGVFFI7765NWMK
Illumina NovaSeq X
225LWLLT3
3
763 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2579CLNY
fastq
reads
I2
1
IGVFFI3389ZEVK
Illumina NovaSeq X
225LWLLT3
5
93 MB
Ansuman Satpathy, Stanford
validated
IGVFFI3251HMSI
fastq
reads
I1
1
IGVFFI3389ZEVK
Illumina NovaSeq X
225LWLLT3
5
126 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM1640UGWP
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Donors
3 items
Accession
Aliases
Sex
Taxa
IGVFDO0938OYMI
ansuman-satpathy:singh_bcell_donor_2
female
Homo sapiens
IGVFDO1264SGCS
ansuman-satpathy:bridge_bone_marrow_donor_2038
male
Homo sapiens
IGVFDO1718HCES
ansuman-satpathy:singh_bcell_donor_1
male
Homo sapiens
Related Measurement Sets
2 items
Accession
Type
Summary
Aliases
Lab
IGVFDS0584KNPT
MeasurementSet
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
ansuman-satpathy:snATAC-seq_igvf12_10x5
Ansuman Satpathy, Stanford
IGVFDS7297BZEA
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
ansuman-satpathy:snRNA-seq_igvf12_10x5
Ansuman Satpathy, Stanford
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7016ZFVC
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
ansuman-satpathy:igvf12_analysis_set_10x5
Ansuman Satpathy, Stanford
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford