{
"@context": "/terms/",
"@id": "/auxiliary-sets/IGVFDS8937ZULR/",
"@type": [
"AuxiliarySet",
"FileSet",
"Item"
],
"accession": "IGVFDS8937ZULR",
"aliases": [
"ansuman-satpathy:multiseq_igvf12_10x5"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM1640UGWP](/multiplexed-samples/IGVFSM1640UGWP/) has in progress subobject tabular file [IGVFFI6870GMPP](/tabular-files/IGVFFI6870GMPP/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM1640UGWP/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2024-07-23T20:58:45.359420+00:00",
"data_use_limitation_summaries": [
"GRU"
],
"donors": [
{
"@id": "/human-donors/IGVFDO1718HCES/",
"accession": "IGVFDO1718HCES",
"aliases": [
"ansuman-satpathy:singh_bcell_donor_1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1264SGCS/",
"accession": "IGVFDO1264SGCS",
"aliases": [
"ansuman-satpathy:bridge_bone_marrow_donor_2038"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0938OYMI/",
"accession": "IGVFDO0938OYMI",
"aliases": [
"ansuman-satpathy:singh_bcell_donor_2"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
}
],
"file_set_type": "lipid-conjugated oligo sequencing",
"files": [
{
"@id": "/sequence-files/IGVFFI0898VOFK/",
"accession": "IGVFFI0898VOFK",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS1_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:30:52.183387+00:00",
"file_format": "fastq",
"file_size": 124526332,
"href": "/sequence-files/IGVFFI0898VOFK/@@download/IGVFFI0898VOFK.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/b2befb8e-bd1c-49c4-97f0-4dec9b424eb2/IGVFFI0898VOFK.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L001_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2061FVIP/",
"accession": "IGVFFI2061FVIP",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS3_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:32:13.142722+00:00",
"file_format": "fastq",
"file_size": 762911796,
"href": "/sequence-files/IGVFFI2061FVIP/@@download/IGVFFI2061FVIP.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/3ddf7712-f4ef-4004-aacf-475c35c4f1aa/IGVFFI2061FVIP.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L003_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4960QSHE/",
"accession": "IGVFFI4960QSHE",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS7_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:34:02.315367+00:00",
"file_format": "fastq",
"file_size": 111483028,
"href": "/sequence-files/IGVFFI4960QSHE/@@download/IGVFFI4960QSHE.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/4d6e0eba-f511-4760-8ea4-04d3c548dceb/IGVFFI4960QSHE.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L007_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7549GEQO/",
"accession": "IGVFFI7549GEQO",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS1_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:30:58.027713+00:00",
"file_format": "fastq",
"file_size": 91882032,
"href": "/sequence-files/IGVFFI7549GEQO/@@download/IGVFFI7549GEQO.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/bba575ff-66ae-41ae-9195-338ecc84e84d/IGVFFI7549GEQO.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L001_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5684DYZN/",
"accession": "IGVFFI5684DYZN",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS3_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:31:57.132397+00:00",
"file_format": "fastq",
"file_size": 93460020,
"href": "/sequence-files/IGVFFI5684DYZN/@@download/IGVFFI5684DYZN.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/e7ac1b13-f204-4966-b64c-3b69da5d603d/IGVFFI5684DYZN.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L003_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0183RLSU/",
"accession": "IGVFFI0183RLSU",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS3_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:32:03.648504+00:00",
"file_format": "fastq",
"file_size": 337708492,
"href": "/sequence-files/IGVFFI0183RLSU/@@download/IGVFFI0183RLSU.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/6db86a95-55e6-470d-bb29-ac1a45404070/IGVFFI0183RLSU.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L003_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4095SOPA/",
"accession": "IGVFFI4095SOPA",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS4_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:32:29.169419+00:00",
"file_format": "fastq",
"file_size": 91833357,
"href": "/sequence-files/IGVFFI4095SOPA/@@download/IGVFFI4095SOPA.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/4c28e870-43e2-4d5f-8f06-d29b33530e97/IGVFFI4095SOPA.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L004_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4495PYAV/",
"accession": "IGVFFI4495PYAV",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS7_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:34:08.324757+00:00",
"file_format": "fastq",
"file_size": 83161658,
"href": "/sequence-files/IGVFFI4495PYAV/@@download/IGVFFI4495PYAV.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/16d3dfe3-1740-4f4c-b90a-387d969e96ed/IGVFFI4495PYAV.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L007_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1149XQRE/",
"accession": "IGVFFI1149XQRE",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS2_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:31:33.184171+00:00",
"file_format": "fastq",
"file_size": 329279541,
"href": "/sequence-files/IGVFFI1149XQRE/@@download/IGVFFI1149XQRE.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/19d857bb-24ef-4b0c-b014-7dc97cf61631/IGVFFI1149XQRE.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L002_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4840WSPP/",
"accession": "IGVFFI4840WSPP",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS4_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:32:22.255100+00:00",
"file_format": "fastq",
"file_size": 124293621,
"href": "/sequence-files/IGVFFI4840WSPP/@@download/IGVFFI4840WSPP.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/1c03fee0-c4a1-4518-9b24-ad79e450658b/IGVFFI4840WSPP.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L004_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4480ZNHZ/",
"accession": "IGVFFI4480ZNHZ",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS1_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:31:04.250340+00:00",
"file_format": "fastq",
"file_size": 332848394,
"href": "/sequence-files/IGVFFI4480ZNHZ/@@download/IGVFFI4480ZNHZ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/9723bf5e-c854-4a8d-84d8-47f7f2a78e4f/IGVFFI4480ZNHZ.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L001_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5111HMGH/",
"accession": "IGVFFI5111HMGH",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS4_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:32:36.219418+00:00",
"file_format": "fastq",
"file_size": 331010664,
"href": "/sequence-files/IGVFFI5111HMGH/@@download/IGVFFI5111HMGH.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/eb0dc11c-da59-4dd2-a425-cb7633e1167a/IGVFFI5111HMGH.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L004_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2579CLNY/",
"accession": "IGVFFI2579CLNY",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS5_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:33:00.973086+00:00",
"file_format": "fastq",
"file_size": 92873958,
"href": "/sequence-files/IGVFFI2579CLNY/@@download/IGVFFI2579CLNY.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/39c63b70-b552-4822-8bc7-0b02ae3c5634/IGVFFI2579CLNY.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L005_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3878XPRD/",
"accession": "IGVFFI3878XPRD",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS6_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:33:40.211935+00:00",
"file_format": "fastq",
"file_size": 327816112,
"href": "/sequence-files/IGVFFI3878XPRD/@@download/IGVFFI3878XPRD.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/039f9fda-8cab-42fa-8ed7-b1b6224b1280/IGVFFI3878XPRD.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L006_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1497ITGW/",
"accession": "IGVFFI1497ITGW",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS2_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:31:41.885238+00:00",
"file_format": "fastq",
"file_size": 744411297,
"href": "/sequence-files/IGVFFI1497ITGW/@@download/IGVFFI1497ITGW.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/9e53e826-e640-4a5b-8840-dd90a6f3db22/IGVFFI1497ITGW.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L002_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2026RIMK/",
"accession": "IGVFFI2026RIMK",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS5_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:33:08.272387+00:00",
"file_format": "fastq",
"file_size": 335796006,
"href": "/sequence-files/IGVFFI2026RIMK/@@download/IGVFFI2026RIMK.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/15857cf2-5e92-41ce-950d-58c2cb82a86a/IGVFFI2026RIMK.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L005_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1480TLUQ/",
"accession": "IGVFFI1480TLUQ",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS5_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:33:16.804096+00:00",
"file_format": "fastq",
"file_size": 754339628,
"href": "/sequence-files/IGVFFI1480TLUQ/@@download/IGVFFI1480TLUQ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/cbb1effd-db34-487e-890e-e69ec23aa411/IGVFFI1480TLUQ.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L005_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0462VFFX/",
"accession": "IGVFFI0462VFFX",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS6_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:33:27.140658+00:00",
"file_format": "fastq",
"file_size": 122164888,
"href": "/sequence-files/IGVFFI0462VFFX/@@download/IGVFFI0462VFFX.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/be928ca1-5364-422a-9c9d-c60974bdefba/IGVFFI0462VFFX.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L006_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5022SCSD/",
"accession": "IGVFFI5022SCSD",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS6_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:33:33.293709+00:00",
"file_format": "fastq",
"file_size": 90788198,
"href": "/sequence-files/IGVFFI5022SCSD/@@download/IGVFFI5022SCSD.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/d0da090c-fc29-4fa9-8350-5633de2ae49e/IGVFFI5022SCSD.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L006_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5873LUDQ/",
"accession": "IGVFFI5873LUDQ",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS7_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:34:15.064752+00:00",
"file_format": "fastq",
"file_size": 299473165,
"href": "/sequence-files/IGVFFI5873LUDQ/@@download/IGVFFI5873LUDQ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/b6f62c63-6e9e-4512-b013-5c8e5ea6d31a/IGVFFI5873LUDQ.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L007_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4743LYWF/",
"accession": "IGVFFI4743LYWF",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS7_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:34:22.844931+00:00",
"file_format": "fastq",
"file_size": 675370384,
"href": "/sequence-files/IGVFFI4743LYWF/@@download/IGVFFI4743LYWF.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/2014f9fd-59e5-42c1-9638-c032ac648456/IGVFFI4743LYWF.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L007_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9712ELVE/",
"accession": "IGVFFI9712ELVE",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS2_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:31:26.289659+00:00",
"file_format": "fastq",
"file_size": 91005368,
"href": "/sequence-files/IGVFFI9712ELVE/@@download/IGVFFI9712ELVE.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/6bfdd73b-0694-4dc0-9a49-fe41dfe7e0c0/IGVFFI9712ELVE.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L002_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4321SLMT/",
"accession": "IGVFFI4321SLMT",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS1_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:31:12.284144+00:00",
"file_format": "fastq",
"file_size": 752251386,
"href": "/sequence-files/IGVFFI4321SLMT/@@download/IGVFFI4321SLMT.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/ecc6e571-5283-4bcf-9eec-446e246b3226/IGVFFI4321SLMT.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L001_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9505JZEP/",
"accession": "IGVFFI9505JZEP",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS2_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:31:20.497808+00:00",
"file_format": "fastq",
"file_size": 123763130,
"href": "/sequence-files/IGVFFI9505JZEP/@@download/IGVFFI9505JZEP.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/b3b667ac-c4f1-424a-917c-140dd0acb11d/IGVFFI9505JZEP.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L002_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5762ILVW/",
"accession": "IGVFFI5762ILVW",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS3_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:31:50.416468+00:00",
"file_format": "fastq",
"file_size": 126973135,
"href": "/sequence-files/IGVFFI5762ILVW/@@download/IGVFFI5762ILVW.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/5426183a-bf51-4c00-aaf4-11e4f1532e90/IGVFFI5762ILVW.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L003_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3251HMSI/",
"accession": "IGVFFI3251HMSI",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS5_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:32:53.901215+00:00",
"file_format": "fastq",
"file_size": 125697817,
"href": "/sequence-files/IGVFFI3251HMSI/@@download/IGVFFI3251HMSI.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/2baa8ce5-4bf7-42a1-9eeb-7ddbca17f25f/IGVFFI3251HMSI.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L005_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7007BFUB/",
"accession": "IGVFFI7007BFUB",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS4_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:32:44.631075+00:00",
"file_format": "fastq",
"file_size": 745883035,
"href": "/sequence-files/IGVFFI7007BFUB/@@download/IGVFFI7007BFUB.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/38aa18aa-8ad1-401d-a87a-4c9637951127/IGVFFI7007BFUB.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L004_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4134SLVA/",
"accession": "IGVFFI4134SLVA",
"aliases": [
"ansuman-satpathy:igvf_exp12_multi_10x5_NGS6_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-07-24T01:33:53.185585+00:00",
"file_format": "fastq",
"file_size": 736189970,
"href": "/sequence-files/IGVFFI4134SLVA/@@download/IGVFFI4134SLVA.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2024/07/24/d98758da-2a21-4a26-9d57-c74c0f3238d3/IGVFFI4134SLVA.fastq.gz",
"sequencing_platform": "/platform-terms/EFO_0022840/",
"status": "released",
"submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI5_S12_L006_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI3389ZEVK/",
"accession": "IGVFFI3389ZEVK",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_multi_10x5_NGS5"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:29:12.646672+00:00",
"file_format": "yaml",
"file_size": 1338,
"href": "/configuration-files/IGVFFI3389ZEVK/@@download/IGVFFI3389ZEVK.yaml.gz",
"s3_uri": "s3://igvf-files/2024/09/18/271e74b0-4f97-4035-a859-4c0ed0de777c/IGVFFI3389ZEVK.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x5_NGS5_multi_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI0425QEQI/",
"accession": "IGVFFI0425QEQI",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_multi_10x5_NGS6"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:29:16.521838+00:00",
"file_format": "yaml",
"file_size": 1336,
"href": "/configuration-files/IGVFFI0425QEQI/@@download/IGVFFI0425QEQI.yaml.gz",
"s3_uri": "s3://igvf-files/2024/09/18/1abefda7-8586-48bb-bb60-562d47e43cdd/IGVFFI0425QEQI.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x5_NGS6_multi_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI5297IJUO/",
"accession": "IGVFFI5297IJUO",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_multi_10x5_NGS2"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:29:01.252839+00:00",
"file_format": "yaml",
"file_size": 1339,
"href": "/configuration-files/IGVFFI5297IJUO/@@download/IGVFFI5297IJUO.yaml.gz",
"s3_uri": "s3://igvf-files/2024/09/18/0aa169a4-1a5e-4b94-b7e2-8067efd381de/IGVFFI5297IJUO.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x5_NGS2_multi_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7765NWMK/",
"accession": "IGVFFI7765NWMK",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_multi_10x5_NGS3"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:29:05.072881+00:00",
"file_format": "yaml",
"file_size": 1337,
"href": "/configuration-files/IGVFFI7765NWMK/@@download/IGVFFI7765NWMK.yaml.gz",
"s3_uri": "s3://igvf-files/2024/09/18/636fc1e1-c4f0-406d-9075-8d704858f798/IGVFFI7765NWMK.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x5_NGS3_multi_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI0192RRTQ/",
"accession": "IGVFFI0192RRTQ",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_multi_10x5_NGS7"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:29:20.543851+00:00",
"file_format": "yaml",
"file_size": 1338,
"href": "/configuration-files/IGVFFI0192RRTQ/@@download/IGVFFI0192RRTQ.yaml.gz",
"s3_uri": "s3://igvf-files/2024/09/18/5657e0f1-0fec-4b23-ad7f-83bba6a35eb3/IGVFFI0192RRTQ.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x5_NGS7_multi_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI0441FRGI/",
"accession": "IGVFFI0441FRGI",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_multi_10x5_NGS1"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:28:57.625748+00:00",
"file_format": "yaml",
"file_size": 1340,
"href": "/configuration-files/IGVFFI0441FRGI/@@download/IGVFFI0441FRGI.yaml.gz",
"s3_uri": "s3://igvf-files/2024/09/18/c8e8d771-2868-498f-8920-23d3a8ee96a0/IGVFFI0441FRGI.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x5_NGS1_multi_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI8369DYSI/",
"accession": "IGVFFI8369DYSI",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_multi_10x5_NGS4"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:29:08.896912+00:00",
"file_format": "yaml",
"file_size": 1337,
"href": "/configuration-files/IGVFFI8369DYSI/@@download/IGVFFI8369DYSI.yaml.gz",
"s3_uri": "s3://igvf-files/2024/09/18/1c586883-65b8-4239-97ea-b4730f58e409/IGVFFI8369DYSI.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x5_NGS4_multi_seqspec.yaml.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS7016ZFVC/"
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"measurement_sets": [
{
"@id": "/measurement-sets/IGVFDS0584KNPT/",
"accession": "IGVFDS0584KNPT",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf12_10x5"
],
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS7297BZEA/",
"accession": "IGVFDS7297BZEA",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf12_10x5"
],
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released"
}
],
"notes": "File_set_type enum oligo-conjugated lipids has been renamed to be lipid-conjugated oligo sequencing.",
"release_timestamp": "2025-03-22T00:39:18.663074+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM1640UGWP/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM1640UGWP",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf12_10x5"
],
"classifications": [
"differentiated cell specimen",
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [
{
"@id": "/institutional-certificates/1e03eda3-a983-4cee-864e-43acb4c1b186/",
"certificate_identifier": "IP115-18",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/460c2060-3b32-43c1-ab4b-b2ef0fbeb2b2/",
"certificate_identifier": "IP115-22",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
}
],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "B cell",
"term_name": "B cell"
},
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "12",
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_files_timestamp": "2024-07-24T01:30:52.183387+00:00",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)",
"uuid": "871cb0c7-1dfa-4b8b-9c46-9293050f89b5"
}