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INDEXED
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AuxiliarySet
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IGVFDS8386FNRJ
IGVFDS8386FNRJ
released
Json view
File Set Type
gRNA sequencing
Summary
gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci
Aliases
jay-shendure:CRISPRa_singlecell_iPSC-derived-neurons_VPH_10Xlane1_CS1
Publications
Multiplex, single-cell CRISPRa screening for cell type specific regulatory elements
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0070OAUF
fastq
reads
I1
1
Illumina NextSeq 2000
AAAMCTVHV
2
310 MB
Jay Shendure, UW
validated
IGVFFI2908NAIM
fastq
reads
R2
1
Illumina NextSeq 2000
AAAMCTVHV
2
1.1 GB
Jay Shendure, UW
validated
IGVFFI3534JLPF
fastq
reads
I1
1
Illumina NextSeq 2000
AAAMCTVHV
1
342 MB
Jay Shendure, UW
validated
IGVFFI3537WAMV
fastq
reads
I2
1
Illumina NextSeq 2000
AAAMCTVHV
2
340 MB
Jay Shendure, UW
validated
IGVFFI4980GVVC
fastq
reads
R2
1
Illumina NextSeq 2000
AAAMCTVHV
1
1.2 GB
Jay Shendure, UW
validated
IGVFFI6258TUAO
fastq
reads
I2
1
Illumina NextSeq 2000
AAAMCTVHV
1
356 MB
Jay Shendure, UW
validated
IGVFFI6689DLGE
fastq
reads
R1
1
Illumina NextSeq 2000
AAAMCTVHV
1
1.0 GB
Jay Shendure, UW
validated
IGVFFI9263MTNB
fastq
reads
R1
1
Illumina NextSeq 2000
AAAMCTVHV
2
975 MB
Jay Shendure, UW
validated
Samples
Donors
Related Measurement Sets
File Sets Using This Auxiliary Set as an Input
Attribution
Award
HG011966
Principal Investigator(s)
Jay Shendure
,
Nadav Ahituv
,
Martin Kircher
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW