{
"@context": "/terms/",
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"@type": [
"AuxiliarySet",
"FileSet",
"Item"
],
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"aliases": [
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],
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"ERROR": [
{
"category": "inconsistent sequence specifications",
"detail": "Auxiliary set [IGVFDS8386FNRJ](/auxiliary-sets/IGVFDS8386FNRJ/) has sequence files: [IGVFFI3534JLPF](/sequence-files/IGVFFI3534JLPF/), [IGVFFI4980GVVC](/sequence-files/IGVFFI4980GVVC/), [IGVFFI6258TUAO](/sequence-files/IGVFFI6258TUAO/), [IGVFFI6689DLGE](/sequence-files/IGVFFI6689DLGE/), [IGVFFI9263MTNB](/sequence-files/IGVFFI9263MTNB/), [IGVFFI3537WAMV](/sequence-files/IGVFFI3537WAMV/), [IGVFFI0070OAUF](/sequence-files/IGVFFI0070OAUF/), [IGVFFI2908NAIM](/sequence-files/IGVFFI2908NAIM/) which share the same `seqspecs` [IGVFFI7154ZFDX](/configuration-files/IGVFFI7154ZFDX/), but belong to different sequencing sets. Sequence files in a file set from the same sequencing set are expected to link to the same seqspec file, which should be unique to that sequencing set. A sequencing set is defined by the combination of flowcell ID, lane, and index for non-single cell data, or flowcell ID, lane, index, and sequencing run for single cell data.",
"level": 60,
"level_name": "ERROR",
"name": "audit_inconsistent_seqspec",
"path": "/auxiliary-sets/IGVFDS8386FNRJ/"
}
]
},
"award": {
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"component": "functional characterization",
"contact_pi": {
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"title": "Jay Shendure"
},
"title": "Massively parallel characterization of variants and elements impacting transcriptional regulation in dynamic cellular systems"
},
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}
],
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}
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],
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}
],
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{
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}
],
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],
"lab": {
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"title": "Jay Shendure, UW"
},
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{
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"accession": "IGVFDS9384BVGM",
"aliases": [
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],
"preferred_assay_title": "scCRISPR screen",
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}
],
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{
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"publication_identifiers": [
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}
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"release_timestamp": "2024-08-13T20:47:21.563052+00:00",
"samples": [
{
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"@type": [
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"Sample",
"Item"
],
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"aliases": [
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],
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"classifications": [
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],
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"modifications": [
{
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}
],
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"@type": [
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"Item"
],
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],
"status": "released",
"summary": "GM25256 (WTC-11)",
"term_name": "GM25256 (WTC-11)"
}
],
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"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to neuron for 19 days (cellular sub pool: 10Xlane1) modified with CRISPRa Sp-dCas9-VPH, transfected with a guide library",
"targeted_sample_term": {
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"status": "released",
"term_name": "neuron"
},
"taxa": "Homo sapiens"
}
],
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"status": "released",
"submitted_by": {
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"title": "Beth Martin"
},
"submitted_files_timestamp": "2023-12-09T00:50:53.650937+00:00",
"summary": "gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci",
"uuid": "ba54d793-6bd3-4793-b689-f1798ad3d759"
}