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AuxiliarySet
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IGVFDS2136RFQE
IGVFDS2136RFQE
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
gRNA sequencing
Summary
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Aliases
gary-hon:CM_Pilot_2_PB_sgRNA_LW234
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0084VSYK
fastq
reads
I1
1
Illumina NextSeq 2000
AAC235NHV
2
336 MB
Gary Hon, UT
validated
IGVFFI1008SZVT
fastq
reads
R2
1
Illumina NextSeq 2000
AAC235NHV
1
1.4 GB
Gary Hon, UT
validated
IGVFFI2829XKCE
fastq
reads
I1
1
Illumina NextSeq 2000
AAC235NHV
1
362 MB
Gary Hon, UT
validated
IGVFFI5301SVVG
fastq
reads
R1
1
Illumina NextSeq 2000
AAC235NHV
1
1.1 GB
Gary Hon, UT
validated
IGVFFI5975FQYH
fastq
reads
R2
1
Illumina NextSeq 2000
AAC235NHV
2
1.3 GB
Gary Hon, UT
validated
IGVFFI6705RMUI
fastq
reads
I2
1
Illumina NextSeq 2000
AAC235NHV
2
347 MB
Gary Hon, UT
validated
IGVFFI8490GAUK
fastq
reads
I2
1
Illumina NextSeq 2000
AAC235NHV
1
382 MB
Gary Hon, UT
validated
IGVFFI9083IKUZ
fastq
reads
R1
1
Illumina NextSeq 2000
AAC235NHV
2
1.0 GB
Gary Hon, UT
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM8137TZJW
InVitroSystem
GM25256 (WTC-11)
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW264), male, Homo sapiens modified with CRISPRi Sp-dCas9, transfected with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO1756PPKO
igvf:donor_of_WTC11
male
Homo sapiens
Related Measurement Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS8705MRYI
MeasurementSet
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
gary-hon:CM_Pilot_2_PB_RNA_LW234
Gary Hon, UT
File Sets Using This Auxiliary Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS9192YMGI
AnalysisSet
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix
gary-hon:CM_Pilot_2_PB_RNA
Gary Hon, UT
Attribution
Award
HG011996
Principal Investigator(s)
Bruce Posner
,
Gary Hon
,
William Kraus
,
Nikhil Munshi
,
Maria Chahrour
Contact P.I.
Gary Hon
Lab
Gary Hon, UT