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AnalysisStep
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SHARE-seq alignment v2 matrix generation step
SHARE-seq alignment v2 matrix generation step
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Title
SHARE-seq alignment v2 matrix generation step
Step Label
share-seq-alignment-v2-matrix-genration-step
Analysis Step Types
read trimming, alignment, filtering, matrix generation
Workflow
IGVFWF0507XZOR
Input Content Types
reads
Output Content Types
sparse gene count matrix
Aliases
jason-buenrostro:share-seq-alignment-v2-matrix-genration-step
Analysis Step Versions
1 item
Analysis Step Versions
Software Versions
/analysis-step-versions/45d73e29-280a-4faf-9762-c1b4c655b689/
fastq-process-v0.9.0
,
gnu-parallel-v20161222.0.0
,
samtools-v1.21.0
,
star-v2.5.2
,
bedtools-v2.26.0
,
tabix-v1.10.2
,
umi-gene-perCell-plot-v3.0.0
Attribution
Award
HG011986
Principal Investigator(s)
Bradley Bernstein
,
Jason Buenrostro
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad