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AnalysisStep
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SHARE-seq alignment v2 fragment generation step
SHARE-seq alignment v2 fragment generation step
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Title
SHARE-seq alignment v2 fragment generation step
Step Label
share-seq-alignment-v2-fragment-genration-step
Analysis Step Types
read trimming, alignment, filtering, fragment generation
Workflow
IGVFWF0507XZOR
Input Content Types
reads
Output Content Types
fragments
Aliases
jason-buenrostro:share-seq-alignment-v2-fragment-genration-step
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Analysis Step Versions
1 item
Analysis Step Versions
Software Versions
/analysis-step-versions/e27a16d2-c700-405f-92c4-89efe1a558ce/
fastq-process-v0.9.0
,
gnu-parallel-v20161222.0.0
,
samtools-v1.21.0
,
bowtie2-v2.5.4
,
bedtools-v2.26.0
,
tabix-v1.10.2