IGVFDS9053MHCS

released
{
    "@context": "/terms/",
    "@id": "/analysis-sets/IGVFDS9053MHCS/",
    "@type": [
        "AnalysisSet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS9053MHCS",
    "aliases": [
        "jesse-engreitz:analysis_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_analysis"
    ],
    "assay_titles": [
        "CRISPR FlowFISH screen"
    ],
    "audit": {
        "ERROR": [
            {
                "category": "unexpected input file set",
                "detail": "Analysis set [IGVFDS9053MHCS](/analysis-sets/IGVFDS9053MHCS/) links to file set(s): [IGVFDS6709HOZL](/measurement-sets/IGVFDS6709HOZL/), [IGVFDS8508PSMW](/measurement-sets/IGVFDS8508PSMW/), [IGVFDS2108LFDU](/measurement-sets/IGVFDS2108LFDU/), [IGVFDS8329NAOV](/measurement-sets/IGVFDS8329NAOV/), [IGVFDS8252XAWN](/measurement-sets/IGVFDS8252XAWN/), [IGVFDS6694UWZS](/measurement-sets/IGVFDS6694UWZS/), [IGVFDS2367NFMX](/measurement-sets/IGVFDS2367NFMX/), [IGVFDS0882RKGQ](/measurement-sets/IGVFDS0882RKGQ/), [IGVFDS2419JZMR](/measurement-sets/IGVFDS2419JZMR/), [IGVFDS4378DCUS](/measurement-sets/IGVFDS4378DCUS/), [IGVFDS0071OLHI](/measurement-sets/IGVFDS0071OLHI/), [IGVFDS1890YDYU](/measurement-sets/IGVFDS1890YDYU/), [IGVFDS3115BOGO](/measurement-sets/IGVFDS3115BOGO/), [IGVFDS0018LXFE](/measurement-sets/IGVFDS0018LXFE/), [IGVFDS9231LVGR](/measurement-sets/IGVFDS9231LVGR/), [IGVFDS8529BNPK](/measurement-sets/IGVFDS8529BNPK/) in `input_file_sets` that are not represented in the `derived_from` of the file sets of the files in this analysis. The analysis set input files are expected to belong to the input file sets.",
                "level": 60,
                "level_name": "ERROR",
                "name": "audit_input_file_sets_derived_from",
                "path": "/analysis-sets/IGVFDS9053MHCS/"
            }
        ],
        "INTERNAL_ACTION": [
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM5229SOKC](/in-vitro-systems/IGVFSM5229SOKC/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM5229SOKC/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM8115WXZU](/in-vitro-systems/IGVFSM8115WXZU/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM8115WXZU/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM0599MHTG](/in-vitro-systems/IGVFSM0599MHTG/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM0599MHTG/"
            },
            {
                "category": "mismatched status",
                "detail": "Released analysis set [IGVFDS9053MHCS](/analysis-sets/IGVFDS9053MHCS/) has in progress subobject publication [ab9749d9-4092-4a1a-b74f-b50f1164e659](/publications/ab9749d9-4092-4a1a-b74f-b50f1164e659/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/analysis-sets/IGVFDS9053MHCS/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM6823DARA](/in-vitro-systems/IGVFSM6823DARA/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM6823DARA/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM2155YTIW](/in-vitro-systems/IGVFSM2155YTIW/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM2155YTIW/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM5826EWDE](/in-vitro-systems/IGVFSM5826EWDE/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM5826EWDE/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM7436UMQD](/in-vitro-systems/IGVFSM7436UMQD/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM7436UMQD/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM7319EZLZ](/in-vitro-systems/IGVFSM7319EZLZ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM7319EZLZ/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM3508ZAFL](/in-vitro-systems/IGVFSM3508ZAFL/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM3508ZAFL/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM6408QEFG](/in-vitro-systems/IGVFSM6408QEFG/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM6408QEFG/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM9054OJLH](/in-vitro-systems/IGVFSM9054OJLH/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM9054OJLH/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM8121JQAK](/in-vitro-systems/IGVFSM8121JQAK/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM8121JQAK/"
            },
            {
                "category": "NTR term ID",
                "detail": "Sample term for [NTR_0000753](/sample-terms/NTR_0000753/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_ntr_term_id",
                "path": "/sample-terms/NTR_0000753/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM6467VTYE](/in-vitro-systems/IGVFSM6467VTYE/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM6467VTYE/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM5424HTHI](/in-vitro-systems/IGVFSM5424HTHI/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM5424HTHI/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM2756NFXE](/in-vitro-systems/IGVFSM2756NFXE/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM2756NFXE/"
            },
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM9750UXVD](/in-vitro-systems/IGVFSM9750UXVD/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM9750UXVD/"
            }
        ],
        "NOT_COMPLIANT": [
            {
                "category": "missing files",
                "detail": "Analysis set [IGVFDS9053MHCS](/analysis-sets/IGVFDS9053MHCS/) has no `files`. File sets are expected to have files.",
                "level": 50,
                "level_name": "NOT_COMPLIANT",
                "name": "audit_no_files",
                "path": "/analysis-sets/IGVFDS9053MHCS/"
            }
        ],
        "WARNING": [
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM5229SOKC](/in-vitro-systems/IGVFSM5229SOKC/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM5229SOKC/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM8115WXZU](/in-vitro-systems/IGVFSM8115WXZU/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM8115WXZU/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM0599MHTG](/in-vitro-systems/IGVFSM0599MHTG/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM0599MHTG/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM6823DARA](/in-vitro-systems/IGVFSM6823DARA/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM6823DARA/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM2155YTIW](/in-vitro-systems/IGVFSM2155YTIW/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM2155YTIW/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM5826EWDE](/in-vitro-systems/IGVFSM5826EWDE/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM5826EWDE/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM7436UMQD](/in-vitro-systems/IGVFSM7436UMQD/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM7436UMQD/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM7319EZLZ](/in-vitro-systems/IGVFSM7319EZLZ/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM7319EZLZ/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM3508ZAFL](/in-vitro-systems/IGVFSM3508ZAFL/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM3508ZAFL/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM6408QEFG](/in-vitro-systems/IGVFSM6408QEFG/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM6408QEFG/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM9054OJLH](/in-vitro-systems/IGVFSM9054OJLH/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM9054OJLH/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM8121JQAK](/in-vitro-systems/IGVFSM8121JQAK/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM8121JQAK/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM6467VTYE](/in-vitro-systems/IGVFSM6467VTYE/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM6467VTYE/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM5424HTHI](/in-vitro-systems/IGVFSM5424HTHI/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM5424HTHI/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM2756NFXE](/in-vitro-systems/IGVFSM2756NFXE/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM2756NFXE/"
            },
            {
                "category": "missing nucleic acid delivery",
                "detail": "In vitro system [IGVFSM9750UXVD](/in-vitro-systems/IGVFSM9750UXVD/) has `construct_library_sets` but is missing `nucleic_acid_delivery`. Samples linked to construct library sets are expected to specify nucleic acid delivery method.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_missing_nucleic_acid_delivery",
                "path": "/in-vitro-systems/IGVFSM9750UXVD/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization",
        "contact_pi": {
            "@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
            "title": "Jesse Engreitz"
        },
        "title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
    },
    "construct_library_sets": [
        {
            "@id": "/construct-library-sets/IGVFDS7621RRLM/",
            "accession": "IGVFDS7621RRLM",
            "file_set_type": "guide library",
            "integrated_content_files": [
                {
                    "@id": "/tabular-files/IGVFFI1837MRQJ/",
                    "accession": "IGVFFI1837MRQJ",
                    "content_type": "guide RNA sequences",
                    "status": "deleted",
                    "summary": "GRCh38 guide RNA sequences"
                },
                {
                    "@id": "/tabular-files/IGVFFI9333CGMN/",
                    "accession": "IGVFFI9333CGMN",
                    "content_type": "guide RNA sequences",
                    "status": "released",
                    "summary": "GRCh38 guide RNA sequences"
                }
            ],
            "status": "released",
            "summary": "guide (sgRNA) library targeting candidate cis-regulatory elements in a genomic locus"
        }
    ],
    "control_for": [],
    "creation_timestamp": "2024-01-16T22:38:02.756733+00:00",
    "description": "Analysis of TLNRD1 CRIPSRi enhancer screen with FlowFISH in TeloHAEC",
    "donors": [
        {
            "@id": "/human-donors/IGVFDO3459DFTW/",
            "accession": "IGVFDO3459DFTW",
            "aliases": [
                "igvf:donor_of_teloHAEC"
            ],
            "sex": "female",
            "status": "released",
            "taxa": "Homo sapiens"
        }
    ],
    "file_set_type": "principal analysis",
    "files": [],
    "functional_assay_mechanisms": [],
    "input_file_sets": [
        {
            "@id": "/measurement-sets/IGVFDS8529BNPK/",
            "accession": "IGVFDS8529BNPK",
            "aliases": [
                "jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep1_bin1"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS8329NAOV/",
            "accession": "IGVFDS8329NAOV",
            "aliases": [
                "jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep1_bin2"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS0071OLHI/",
            "accession": "IGVFDS0071OLHI",
            "aliases": [
                "jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep1_bin3"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS6709HOZL/",
            "accession": "IGVFDS6709HOZL",
            "aliases": [
                "jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep1_bin4"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS2367NFMX/",
            "accession": "IGVFDS2367NFMX",
            "aliases": [
                "jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep2_bin1"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS0882RKGQ/",
            "accession": "IGVFDS0882RKGQ",
            "aliases": [
                "jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep2_bin2"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS8252XAWN/",
            "accession": "IGVFDS8252XAWN",
            "aliases": [
                "jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep2_bin3"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS6694UWZS/",
            "accession": "IGVFDS6694UWZS",
            "aliases": [
                "jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep2_bin4"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS8508PSMW/",
            "accession": "IGVFDS8508PSMW",
            "aliases": [
                "jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep3_bin1"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS3115BOGO/",
            "accession": "IGVFDS3115BOGO",
            "aliases": [
                "jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep3_bin2"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS4378DCUS/",
            "accession": "IGVFDS4378DCUS",
            "aliases": [
                "jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep3_bin3"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS9231LVGR/",
            "accession": "IGVFDS9231LVGR",
            "aliases": [
                "jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep3_bin4"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS1890YDYU/",
            "accession": "IGVFDS1890YDYU",
            "aliases": [
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        {
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        {
            "@id": "/measurement-sets/IGVFDS2419JZMR/",
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            "status": "released"
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    ],
    "input_for": [],
    "lab": {
        "@id": "/labs/jesse-engreitz/",
        "title": "Jesse Engreitz, Stanford"
    },
    "notes": "This object's file_set_type was primary analysis and has been updated to be principal analysis.",
    "protocols": [
        "https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
    ],
    "publications": [
        {
            "@id": "/publications/ab9749d9-4092-4a1a-b74f-b50f1164e659/",
            "publication_identifiers": [
                "PMID:37733863",
                "doi:10.1126/science.adg7492"
            ],
            "status": "in progress"
        }
    ],
    "release_timestamp": "2024-02-07T18:50:00.110075+00:00",
    "sample_summary": "Homo sapiens TeloHAEC cell line, modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library, sorted on expression of TLNRD1",
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            "taxa": "Homo sapiens"
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            "taxa": "Homo sapiens"
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            "taxa": "Homo sapiens"
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            "taxa": "Homo sapiens"
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            "taxa": "Homo sapiens"
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            "taxa": "Homo sapiens"
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        {
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            "taxa": "Homo sapiens"
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            "taxa": "Homo sapiens"
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        {
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            "accession": "IGVFSM9750UXVD",
            "aliases": [
                "jesse-engreitz:in-vitro-system_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep1_bin1"
            ],
            "classifications": [
                "cell line"
            ],
            "institutional_certificates": [],
            "modifications": [
                {
                    "@id": "/crispr-modifications/b4bc725a-8eeb-4180-9789-bece3516c0c1/",
                    "modality": "interference",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/NTR_0000753/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:TeloHAEC"
                    ],
                    "status": "released",
                    "summary": "TeloHAEC",
                    "term_name": "TeloHAEC"
                }
            ],
            "status": "released",
            "summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS bin for 0-25% expression of TLNRD1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
            "taxa": "Homo sapiens"
        }
    ],
    "schema_version": "9",
    "status": "released",
    "submitted_by": {
        "@id": "/users/4b2083b4-24c1-41d8-9daa-e79299f00d6e/",
        "title": "Ronghao Zhou"
    },
    "summary": "CRISPR interference FlowFISH screen targeting TLNRD1",
    "uuid": "c38ce05d-b4a3-4d3e-bf38-b9c8828ef22e",
    "workflows": []
}