Home

IGVFDS8205NXKP

released
Aliases
ansuman-satpathy:igvf1_analysis_set
File Set Type
intermediate analysis
Summary
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Description
Quality-control workflow performed by Satpathy Lab - U2OS, HAP1, HL60, K562, and HUDEP2
Workflows
Samples
HUDEP-2, HAP-1, U2OS, K562, HL-60 cell line and multiplexed sample
Protocols

Files

10 items
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.8 MB
validation exempted
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.7 MB
validation exempted
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
204 MB
validated
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
475 KB
validated
tsv
fragments
fragments
Ansuman Satpathy, Stanford
4.0 GB
validation exempted
tsv
fragments
fragments
Ansuman Satpathy, Stanford
3.5 GB
validation exempted
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
147 MB
validated
tbi
index
index of IGVFFI4763UQQR
Ansuman Satpathy, Stanford
1.3 MB
validated
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
445 KB
validated
tbi
index
index of IGVFFI4750SIPG
Ansuman Satpathy, Stanford
1.5 MB
validated

File Association Graph

Loading…
File Set
File
AnalysisSet
AuxiliarySet
MeasurementSet

Samples

2 items
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples
MultiplexedSample
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples

Donors

5 items
Aliases
  • igvf:donor_of_HUDEP-2
unspecified
Homo sapiens
  • igvf:donor_of_HL-60
female
Homo sapiens
  • igvf:donor_of_HAP-1
male
Homo sapiens
  • igvf:donor_of_K562
female
Homo sapiens
  • igvf:donor_of_U2OS
female
Homo sapiens

MeasurementSet Input File Sets

4 items
Associated Auxiliary Sets
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples

AuxiliarySet Input File Sets

2 items
Associated Measurement Sets
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford