{
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],
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],
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{
"category": "missing analysis step version",
"detail": "Analysis set [IGVFDS7801YPEU](/analysis-sets/IGVFDS7801YPEU/) links to file(s) [IGVFFI9468KRLQ](/signal-files/IGVFFI9468KRLQ/), [IGVFFI4530JOCA](/signal-files/IGVFFI4530JOCA/), [IGVFFI4106YTGZ](/signal-files/IGVFFI4106YTGZ/), [IGVFFI6250RJNE](/signal-files/IGVFFI6250RJNE/), [IGVFFI4871DVXE](/signal-files/IGVFFI4871DVXE/), [IGVFFI8400FXRX](/signal-files/IGVFFI8400FXRX/), [IGVFFI9916JAHE](/signal-files/IGVFFI9916JAHE/) that are missing `analysis_step_version`. Analysis set files are expected to specify analysis step version.",
"level": 40,
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"name": "audit_analysis_set_files_missing_analysis_step_version",
"path": "/analysis-sets/IGVFDS7801YPEU/"
}
]
},
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},
"title": "Massively parallel characterization of variants and elements impacting transcriptional regulation in dynamic cellular systems"
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],
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}
],
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},
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},
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},
{
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},
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},
{
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"upload_status": "validated"
},
{
"@id": "/signal-files/IGVFFI9916JAHE/",
"accession": "IGVFFI9916JAHE",
"aliases": [
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],
"content_type": "signal",
"creation_timestamp": "2024-07-01T19:59:21.029721+00:00",
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"submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_scATAC_EB_correction_nobackup/bigwigs/surface_ectoderm-TileSize-50-normMethod-ReadsInTSS-ArchR_mm39.bw",
"upload_status": "validated"
}
],
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{
"@id": "/measurement-sets/IGVFDS1560LMQZ/",
"accession": "IGVFDS1560LMQZ",
"aliases": [
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],
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},
{
"@id": "/measurement-sets/IGVFDS6675BDQA/",
"accession": "IGVFDS6675BDQA",
"aliases": [
"jay-shendure:scATAC_mEBs_rep1_10XlaneB_reads"
],
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},
{
"@id": "/measurement-sets/IGVFDS7446XPVQ/",
"accession": "IGVFDS7446XPVQ",
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],
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},
{
"@id": "/measurement-sets/IGVFDS0935XBYS/",
"accession": "IGVFDS0935XBYS",
"aliases": [
"jay-shendure:scATAC_mEBs_rep2_10XlaneB_reads"
],
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}
],
"lab": {
"@id": "/labs/jay-shendure/",
"title": "Jay Shendure, UW"
},
"notes": "This object's file_set_type was primary analysis and has been updated to be principal analysis.",
"protocols": [
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],
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{
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]
}
],
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{
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],
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"aliases": [
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],
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],
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{
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"OntologyTerm",
"Item"
],
"status": "released",
"summary": "mouse embryonic stem cell",
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}
],
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"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44",
"targeted_sample_term": {
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"term_name": "embryoid body"
},
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},
{
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"Sample",
"Item"
],
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],
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}
],
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},
{
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],
"accession": "IGVFSM7126ZMPT",
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],
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}
],
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},
{
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"Item"
],
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}
],
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},
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"summary": "principal analysis of scATAC-seq data",
"uuid": "c69d7cb4-f432-4b38-b99c-7233b7d96af5"
}