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IGVFDS7797WATU

released
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Aliases
charles-gersbach:analysis-set-crispra-stim-NT-region3-DEanalysis
File Set Type
principal analysis
Summary
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus and a non-targeting guide (sgRNA) library
Workflows
Samples
Homo sapiens GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 42 day(s) post change, perturbed with 1 μM Endothelin-1 for 3 days, transfected with a guide library
Attribution
Charles Gersbach, Duke

Files

2 items
csv
differential chromatin contact quantifications
GRCh38 differential chromatin contact quantifications
Charles Gersbach, Duke
7.6 KB
validated
tsv
bin paired count
GRCh38 bin paired count
Charles Gersbach, Duke
2.0 KB
validated

File Association Graph

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File Set
File
AnalysisSet

Samples

5 items
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days treated with 1 μM Endothelin-1 for 3 days, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days treated with 1 μM Endothelin-1 for 3 days, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days treated with 1 μM Endothelin-1 for 3 days, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days treated with 1 μM Endothelin-1 for 3 days, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days treated with 1 μM Endothelin-1 for 3 days, transduced (lentivirus) with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

Associated Construct Library Sets

2 items
Summary
Library Design Files
guide (sgRNA) library targeting accessible genome regions in a genomic locus
non-targeting guide (sgRNA) library

AnalysisSet Input File Sets

5 items
CRISPR HiCAR integrating a non-targeting guide (sgRNA) library
CRISPR HiCAR integrating a non-targeting guide (sgRNA) library
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus