IGVFDS7649PCRX

released
{
    "@context": "/terms/",
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        "FileSet",
        "Item"
    ],
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    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
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        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released matrix file [IGVFFI1809CHBB](/matrix-files/IGVFFI1809CHBB/) has in progress subobject reference file [IGVFFI3944QOJF](/reference-files/IGVFFI3944QOJF/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/matrix-files/IGVFFI1809CHBB/"
            },
            {
                "category": "mismatched status",
                "detail": "Released matrix file [IGVFFI1809CHBB](/matrix-files/IGVFFI1809CHBB/) has in progress subobject reference file [IGVFFI8311QXYM](/reference-files/IGVFFI8311QXYM/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/matrix-files/IGVFFI1809CHBB/"
            },
            {
                "category": "missing demultiplexed sample",
                "detail": "Analysis set [IGVFDS7649PCRX](/analysis-sets/IGVFDS7649PCRX/) has `input_file_sets` with multiplexed samples: [IGVFSM9574RAZA](/multiplexed-samples/IGVFSM9574RAZA/) but no `demultiplexed_sample`. Analysis sets with multiplexed samples are expected to specify a demultiplexed sample.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_analysis_set_multiplexed_samples",
                "path": "/analysis-sets/IGVFDS7649PCRX/"
            },
            {
                "category": "mismatched status",
                "detail": "Released multiplexed sample [IGVFSM9574RAZA](/multiplexed-samples/IGVFSM9574RAZA/) has in progress subobject tabular file [IGVFFI2383CFVI](/tabular-files/IGVFFI2383CFVI/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/multiplexed-samples/IGVFSM9574RAZA/"
            }
        ]
    },
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        "@id": "/awards/HG012076/",
        "component": "mapping",
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            "@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
            "title": "Ansuman Satpathy"
        },
        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
    },
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    "creation_timestamp": "2025-03-21T23:05:10.253513+00:00",
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    "functional_assay_mechanisms": [],
    "input_file_sets": [
        {
            "@id": "/auxiliary-sets/IGVFDS3265EOGA/",
            "accession": "IGVFDS3265EOGA",
            "aliases": [
                "ansuman-satpathy:multiseq_igvf16_10x2"
            ],
            "file_set_type": "lipid-conjugated oligo sequencing",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS9875NBZW/",
            "accession": "IGVFDS9875NBZW",
            "aliases": [
                "ansuman-satpathy:snRNA-seq_igvf16_10x2"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS1125HXCL/",
            "accession": "IGVFDS1125HXCL",
            "aliases": [
                "ansuman-satpathy:snATAC-seq_igvf16_10x2"
            ],
            "file_set_type": "experimental data",
            "status": "released"
        }
    ],
    "input_for": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "protocols": [
        "https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
    ],
    "release_timestamp": "2025-03-22T00:44:14.610575+00:00",
    "sample_summary": "Homo sapiens multiplexed sample of induced pluripotent stem cell",
    "samples": [
        {
            "@id": "/multiplexed-samples/IGVFSM9574RAZA/",
            "@type": [
                "MultiplexedSample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM9574RAZA",
            "aliases": [
                "ansuman-satpathy:multiplexed_sample_igvf16_10x2"
            ],
            "cellular_sub_pool": "2",
            "classifications": [
                "differentiated cell specimen",
                "multiplexed sample"
            ],
            "disease_terms": [],
            "institutional_certificates": [
                {
                    "@id": "/institutional-certificates/1926d993-629d-42d9-a962-f391ea6ee18f/",
                    "certificate_identifier": "IP115-23",
                    "controlled_access": true,
                    "data_use_limitation": "GRU",
                    "status": "in progress"
                }
            ],
            "modifications": [],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0004905/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "released",
                    "summary": "induced pluripotent stem cell",
                    "term_name": "induced pluripotent stem cell"
                }
            ],
            "status": "released",
            "summary": "multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples",
            "taxa": "Homo sapiens",
            "treatments": []
        }
    ],
    "schema_version": "9",
    "status": "released",
    "submitted_by": {
        "@id": "/users/6667a92a-d202-493a-8c7d-7a56d1380356/",
        "title": "Khine Lin"
    },
    "submitted_files_timestamp": "2025-02-14T22:51:34.700074+00:00",
    "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix",
    "uuid": "211aa2a2-742e-44bc-8f70-286642a51d50",
    "workflows": [
        {
            "@id": "/workflows/IGVFWF1453HVEC/",
            "accession": "IGVFWF1453HVEC",
            "name": "Satpathy Cell Ranger",
            "status": "released",
            "uniform_pipeline": false
        }
    ]
}