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IGVFDS7388FOPN

released
GRU
Aliases
ansuman-satpathy:igvf16_analysis_set
ansuman-satpathy:igvf16_analysis_set_10x1
File Set Type
intermediate analysis
Summary
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Description
Quality-control workflow performed by Satpathy Lab - iPSC village pancreatic differentiation
Workflows
Samples
Homo sapiens multiplexed sample of induced pluripotent stem cell
Protocols
Attribution
Ansuman Satpathy, Stanford

Files

5 items
tbi
index
index of IGVFFI4068UGBT
Ansuman Satpathy, Stanford
1.7 MB
validated
tsv
fragments
fragments
Ansuman Satpathy, Stanford
5.1 GB
validation exempted
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
242 MB
validated
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
2.8 MB
validation exempted
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
523 KB
validated

File Association Graph

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File Set
File
AnalysisSet
AuxiliarySet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples

Donors

44 items
Aliases
  • ansuman-satpathy:donor_of_KOLF2.2J
  • igvf:donor_KOLF2.2J
male
Homo sapiens
  • ansuman-satpathy:donor_of_PENN020i-588-6
  • igvf:donor_PENN0201-588-6
female
Homo sapiens
  • ansuman-satpathy:donor_of_GM01652
  • igvf:donor_GM01652
female
Homo sapiens
  • ansuman-satpathy:donor_of_C004
  • igvf:donor_C004
female
Homo sapiens
  • ansuman-satpathy:donor_of_Hues6
  • igvf:donor_Hues6
female
Homo sapiens
  • ansuman-satpathy:donor_of_WA13
  • igvf:donor_WA13
male
Homo sapiens
  • ansuman-satpathy:donor_of_PENN086i-278-1
  • igvf:donor_PENN086i-278-1
male
Homo sapiens
  • ansuman-satpathy:donor_of_C003
  • igvf:donor_C003
male
Homo sapiens
  • ansuman-satpathy:donor_of_A007
  • igvf:donor_A007
female
Homo sapiens
  • ansuman-satpathy:donor_of_B004
  • igvf:donor_B004
female
Homo sapiens

MeasurementSet Input File Sets

2 items
Associated Auxiliary Sets
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples

AuxiliarySet Input File Sets

1 item
Auxiliary Sets
Measured Samples
Associated Measurement Sets
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples