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IGVFDS6846CJYR

released
Aliases
tim-reddy:starr-seq-principal-analysis-set-k562-P020
File Set Type
principal analysis
Summary
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: HG02666, HG02771, HG02804, HG02811, HG02881
Samples
Homo sapiens K562 cell line, transfected with a reporter library
Protocols
Attribution
Tim Reddy, Duke

Files

11 items
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
7.7 GB
validated
bai
index
index of IGVFFI0153UJPQ
Tim Reddy, Duke
2.7 MB
validated
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
8.1 GB
validated
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
110 MB
validated
bai
index
index of IGVFFI8085KQXE
Tim Reddy, Duke
3.2 MB
validated
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
9.5 GB
validated
bai
index
index of IGVFFI3279POMC
Tim Reddy, Duke
2.6 MB
validated
bai
index
index of IGVFFI6159QXWU
Tim Reddy, Duke
3.8 MB
validated
tsv
reporter variants
GRCh38 reporter variants
Bill Majoros, Duke
47 MB
validation exempted
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
9.7 GB
validated

File Association Graph

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File Set
File
AnalysisSet
ConstructLibrarySet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_K562
female
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: HG02666, HG02771, HG02804, HG02811, HG02881

MeasurementSet Input File Sets

1 item
Measurement Sets
Measured Samples
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: HG02666, HG02771, HG02804, HG02811, HG02881
Homo sapiens (female) K562 cell line transfected with a reporter library

ConstructLibrarySet Input File Sets

1 item
Accession
Applied To Samples
reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: HG02666, HG02771, HG02804, HG02811, HG02881
Homo sapiens (female) K562 cell line transfected with a reporter library